Man pages for ToxicoGx
Analysis of Large-Scale Toxico-Genomic Data
| availableTSets | Return a table of ToxicoSets available for download |
| checkTSetStructure | A function to verify the structure of a ToxicoSet |
| computeAUC | Computes the AUC for a Drug Dose Viability Curve |
| computeICn | Computes the ICn for any n in 0-100 for a Drug Dose Viability... |
| dim-ToxicoSet-method | Get the dimensions of a ToxicoSet |
| dot-saveTSetAsGroundTruth | Generate data to test a tSet object and class accessor... |
| downloadTSet | Download a ToxicoSet object |
| drugGeneResponseCurve | Compares gene expression for a specificed set of features... |
| drugInfo | drugInfo Generic |
| drugInfo-set | drugInfo<- Generic |
| drugNames | drugNames Generic |
| drugNames-set | drugNames<- Generic |
| drugPerturbationSig | Drug perturbation analysis |
| drugTimeResponseCurve | Compares viabilities at a given dose over different... |
| geneDrugPerturbation | Compute gene-drug associations |
| HCC_sig | HCC_sig dataset |
| logLogisticRegression | Fits curves of the form E = E_inf + (1 - E_inf)/(1 +... |
| mDataNames-ToxicoSet-method | mDataNames |
| msg_verbose | Message if verbose |
| names-ToxicoSet-method | tSet Name |
| pharmacoSettoToxicoSet | Coerce pSet to tSet |
| rankGeneDrugPerturbation | Rank genes based on drug effect |
| showSigAnnot | Show the Annotations of a signature object |
| show-ToxicoSet-method | Show a ToxicoSet |
| show-ToxicoSig-method | Show ToxicoGx Signatures |
| subsetTo | A function to subset a ToxicoSet to data containing only... |
| sub-ToxicoSet-ANY-ANY-ANY-method | '[' |
| summarizeMolecularProfiles | Takes molecular data from a ToxicoSet, and summarises them... |
| summarizeSensitivityProfiles | Takes the sensitivity data from a ToxicoSet, and summarises... |
| TGGATESsmall | TGGATESsmall dataset |
| ToxicoSet | ToxicoSet constructor |
| ToxicoSet-class | Class to contain Toxico-genomic Data |
| ToxicoSig | ToxicoSig Constructor |
| updateCellId | A function to update cell ids |
| updateDrugId | A function to update drug ids |
| warn_verbose | Warning if verbose |
