View source: R/Combinatorics.R
N1Spr | R Documentation |
N1Spr()
calculates the number of trees one subtree prune-and-regraft
operation away from a binary input tree using the formula given by
\insertCiteAllen2001;textualTreeTools;
IC1Spr()
calculates the information content of trees at this
distance: i.e. the entropy corresponding to the proportion of all possible
n-tip trees whose SPR distance is at most one from a specified tree.
N1Spr(n)
IC1Spr(n)
n |
Integer vector specifying the number of tips in a tree. |
N1Spr()
returns an integer vector denoting the number of trees one
SPR rearrangement away from the input tree..
IC1Spr()
returns an numeric vector giving the phylogenetic
information content of trees 0 or 1 SPR rearrangement from an n-leaf tree,
in bits.
N1Spr(4:6)
IC1Spr(5)
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