WriteTntCharacters: Write morphological character matrix to TNT file

In TreeTools: Create, Modify and Analyse Phylogenetic Trees

Write morphological character matrix to TNT file

Description

Write morphological character matrix to TNT file

Usage

WriteTntCharacters(
  dataset,
  filepath = NULL,
  comment = "Dataset written by `TreeTools::WriteTntCharacters()`",
  types = NULL,
  pre = "",
  post = ""
)

## S3 method for class 'phyDat'
WriteTntCharacters(
  dataset,
  filepath = NULL,
  comment = "Dataset written by `TreeTools::WriteTntCharacters()`",
  types = NULL,
  pre = "",
  post = ""
)

## S3 method for class 'matrix'
WriteTntCharacters(
  dataset,
  filepath = NULL,
  comment = "Dataset written by `TreeTools::WriteTntCharacters()`",
  types = NULL,
  pre = "",
  post = ""
)

Arguments

dataset	Morphological dataset of class phyDat or matrix.
filepath	Path to file; if NULL, returns a character vector.
comment	Optional comment with which to entitle matrix.
types	Optional list specifying where different data types begin. c(num = 1, dna = 10) sets characters 1..9 as numeric, 10..end as DNA.
pre, post	Character vector listing text to print before and after the character matrix. Specify ⁠pre = 'piwe=;⁠ if the matrix is to be analysed using extended implied weighting (⁠xpiwe=⁠).

Author(s)

Martin R. Smith ([e-mail])

See Also

ReadTntCharacters()

Examples

data("Lobo", package = "TreeTools")

WriteTntCharacters(Lobo.phy)

# Read with extended implied weighting
WriteTntCharacters(Lobo.phy, pre = "piwe=10;", post = "xpiwe=;")

# Write to a file with:
# WriteTntCharacters(Lobo.phy, "example_file.tnt")

TreeTools documentation built on Sept. 11, 2024, 8:27 p.m.