alphabet: The Alphabet in Use

In VLMC: Variable Length Markov Chains ('VLMC') Models

The Alphabet in Use

Description

Return the alphabet in use, as a vector of “characters”.

Usage

alphabet(x, ...)
## S3 method for class 'vlmc'
alphabet(x, ...)

Arguments

x	any R object, currently only available for vlmc ones.
...	potential further arguments passed to and from methods.

Value

a character vector, say r, with length equal to the alphabet size. Currently, typically all r[i] are strings of just one character.

See Also

alpha2int for conversion to and from integer codings.

Examples

data(bnrf1)
vb <- vlmc(bnrf1EB, cutoff = 5)
alphabet(vb) # |--> "a" "c" "g" "t"

VLMC documentation built on Sept. 11, 2024, 5:28 p.m.