WhiteStripe: White Matter Normalization for Magnetic Resonance Images using Whitestripe

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Shinohara et. al introduced Whitestripe, an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the MNI template and uses histogram-based methods.

Author
Taki Shinohara, John Muschelli
Date of publication
2015-05-21 16:38:33
Maintainer
John Muschelli <muschellij2@gmail.com>
License
GPL-3
Version
1.1.1

View on CRAN

Man pages

download_img_data
Download T1 and T2 data
get.deriv.smooth.hist
Gets $n^th$ derivative of smoothed histogram
get.first.mode
Get First Peak
get.largest.mode
Grab largest peak
get.last.mode
Get Last Peak
make_img_voi
Make Image VOI
s.hist
smoothed_histogram
smooth_hist
Histogram smoothing for whitestripe
t1.voi.hist
t1.voi.hist
t2.voi.hist
t2.voi.hist
whitestripe
Performs White Stripe of T1 or T2 Images
whitestripe_hybrid
Hybrid WhiteStripe
whitestripe_ind_to_mask
WhiteStripe Indices to Mask
whitestripe_norm
Normalize Image using white stripe
xvals
midpoints of VOI histogram

Files in this package

WhiteStripe
WhiteStripe/inst
WhiteStripe/inst/CITATION
WhiteStripe/NAMESPACE
WhiteStripe/data
WhiteStripe/data/t2.voi.hist.rda
WhiteStripe/data/smoothed_histogram.rda
WhiteStripe/data/t1.voi.hist.rda
WhiteStripe/R
WhiteStripe/R/get.largest.mode.R
WhiteStripe/R/whitestripe_ind.R
WhiteStripe/R/download_img_data.R
WhiteStripe/R/smooth_hist.R
WhiteStripe/R/t1.voi.R
WhiteStripe/README.md
WhiteStripe/MD5
WhiteStripe/DESCRIPTION
WhiteStripe/man
WhiteStripe/man/smooth_hist.Rd
WhiteStripe/man/make_img_voi.Rd
WhiteStripe/man/whitestripe_norm.Rd
WhiteStripe/man/get.last.mode.Rd
WhiteStripe/man/whitestripe_ind_to_mask.Rd
WhiteStripe/man/t1.voi.hist.Rd
WhiteStripe/man/s.hist.Rd
WhiteStripe/man/download_img_data.Rd
WhiteStripe/man/get.largest.mode.Rd
WhiteStripe/man/t2.voi.hist.Rd
WhiteStripe/man/whitestripe.Rd
WhiteStripe/man/xvals.Rd
WhiteStripe/man/get.first.mode.Rd
WhiteStripe/man/whitestripe_hybrid.Rd
WhiteStripe/man/get.deriv.smooth.hist.Rd