WhiteStripe: White Matter Normalization for Magnetic Resonance Images using Whitestripe

Shinohara et. al (2014) <DOI:10.1016/j.nicl.2014.08.008> introduced Whitestripe, an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the MNI template and uses histogram-based methods.

AuthorR. Taki Shinohara, John Muschelli
Date of publication2017-03-08 19:59:33
MaintainerJohn Muschelli <muschellij2@gmail.com>
LicenseGPL-3
Version2.2.2

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Files

WhiteStripe
WhiteStripe/inst
WhiteStripe/inst/CITATION
WhiteStripe/inst/doc
WhiteStripe/inst/doc/Running_WhiteStripe.html
WhiteStripe/inst/doc/Running_WhiteStripe.Rmd
WhiteStripe/inst/doc/Running_WhiteStripe.R
WhiteStripe/NAMESPACE
WhiteStripe/data
WhiteStripe/data/t2.voi.hist.rda
WhiteStripe/data/smoothed_histogram.rda
WhiteStripe/data/t1.voi.hist.rda
WhiteStripe/R
WhiteStripe/R/get.largest.mode.R WhiteStripe/R/whitestripe_ind.R WhiteStripe/R/download_img_data.R WhiteStripe/R/smooth_hist.R WhiteStripe/R/t1.voi.R
WhiteStripe/vignettes
WhiteStripe/vignettes/Running_WhiteStripe.Rmd
WhiteStripe/MD5
WhiteStripe/build
WhiteStripe/build/vignette.rds
WhiteStripe/DESCRIPTION
WhiteStripe/man
WhiteStripe/man/ws_img_data.Rd WhiteStripe/man/smooth_hist.Rd WhiteStripe/man/make_img_voi.Rd WhiteStripe/man/whitestripe_norm.Rd WhiteStripe/man/get.last.mode.Rd WhiteStripe/man/whitestripe_ind_to_mask.Rd WhiteStripe/man/t1.voi.hist.Rd WhiteStripe/man/s.hist.Rd WhiteStripe/man/download_img_data.Rd WhiteStripe/man/get.largest.mode.Rd WhiteStripe/man/t2.voi.hist.Rd WhiteStripe/man/whitestripe.Rd WhiteStripe/man/xvals.Rd WhiteStripe/man/get.first.mode.Rd WhiteStripe/man/whitestripe_hybrid.Rd WhiteStripe/man/get.deriv.smooth.hist.Rd

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