preprocess_phenodata: preprocess_phenodata

In ZIM4rv: Gene‐based Association Tests of Zero‐inflated Count Phenotype for Rare Variants

preprocess_phenodata

Description

Preprocess phenotype files in PLINK format

This function converts PLINK format files into data frames containing phenotypes and covariates information in proper format for the model fitting and testing.

Usage

preprocess_phenodata(pheno_file, cov_file)

Arguments

pheno_file	phenotype file in PLINK format
cov_file	covariate file in PLINK format

Value

a data frame containing phenotypes and covariates respectively for all individuals in the required format for model fitting and testing

Examples

data(Ex2_pheno)
data(Ex2_covar)
preprocess_phenodata(Ex2_pheno,Ex2_covar)

ZIM4rv documentation built on April 3, 2025, 7:39 p.m.