abc: Tools for Approximate Bayesian Computation (ABC)

Implements several ABC algorithms for performing parameter estimation, model selection, and goodness-of-fit. Cross-validation tools are also available for measuring the accuracy of ABC estimates, and to calculate the misclassification probabilities of different models.

Author
Csillery Katalin [aut], Lemaire Louisiane [aut], Francois Olivier [aut], Blum Michael [aut, cre]
Date of publication
2015-05-05 11:34:14
Maintainer
Blum Michael <michael.blum@imag.fr>
License
GPL (>= 3)
Version
2.1

View on CRAN

Man pages

abc
Parameter estimation with Approximate Bayesian Computation...
cv4abc
Cross validation for Approximate Bayesian Computation (ABC)
cv4postpr
Leave-one-our cross validation for model selection ABC
expected.deviance
Expected deviance
gfit
Goodness of fit
gfitpca
Goodness of fit with principal component analysis
hist.abc
Posterior histograms
plot.abc
Diagnostic plots for ABC
plot.cv4abc
Cross-validation plots for ABC
plot.cv4postpr
Barplot of model misclassification
plot.gfit
Goodness-of-fit plot for ABC
postpr
Estimating posterior model probabilities
summary.abc
Summaries of posterior samples generated by ABC algortithms
summary.cv4abc
Calculates the cross-validation prediction error
summary.cv4postpr
Confusion matrix and misclassification probabilities of...
summary.gfit
Calculates the p-value of the goodness-of-fit test.
summary.postpr
Posterior model probabilities and Bayes factors

Files in this package

abc
abc/inst
abc/inst/CITATION
abc/inst/doc
abc/inst/doc/abcvignette.pdf
abc/inst/doc/abcvignette.Rnw
abc/inst/doc/abcvignette.R
abc/NAMESPACE
abc/R
abc/R/gfit.R
abc/R/abc.R
abc/R/postpr.R
abc/R/gfitpca.R
abc/R/cv4postpr.R
abc/R/misc.R
abc/R/expected.deviance.R
abc/R/cv4abc.R
abc/vignettes
abc/vignettes/abcvignette.bib
abc/vignettes/abcvignette.Rnw
abc/vignettes/runms4ppc.R
abc/vignettes/runms.R
abc/MD5
abc/build
abc/build/vignette.rds
abc/DESCRIPTION
abc/man
abc/man/expected.deviance.Rd
abc/man/abc.Rd
abc/man/summary.gfit.Rd
abc/man/gfit.Rd
abc/man/plot.cv4abc.Rd
abc/man/plot.cv4postpr.Rd
abc/man/plot.gfit.Rd
abc/man/hist.abc.Rd
abc/man/cv4postpr.Rd
abc/man/summary.abc.Rd
abc/man/summary.cv4postpr.Rd
abc/man/summary.postpr.Rd
abc/man/postpr.Rd
abc/man/cv4abc.Rd
abc/man/gfitpca.Rd
abc/man/summary.cv4abc.Rd
abc/man/plot.abc.Rd
abc/CHANGES