abc: Tools for Approximate Bayesian Computation (ABC)
Version 2.1

Implements several ABC algorithms for performing parameter estimation, model selection, and goodness-of-fit. Cross-validation tools are also available for measuring the accuracy of ABC estimates, and to calculate the misclassification probabilities of different models.

Browse man pages Browse package API and functions Browse package files

AuthorCsillery Katalin [aut], Lemaire Louisiane [aut], Francois Olivier [aut], Blum Michael [aut, cre]
Date of publication2015-05-05 11:34:14
MaintainerBlum Michael <michael.blum@imag.fr>
LicenseGPL (>= 3)
Version2.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("abc")

Man pages

abc: Parameter estimation with Approximate Bayesian Computation...
cv4abc: Cross validation for Approximate Bayesian Computation (ABC)
cv4postpr: Leave-one-our cross validation for model selection ABC
expected.deviance: Expected deviance
gfit: Goodness of fit
gfitpca: Goodness of fit with principal component analysis
hist.abc: Posterior histograms
plot.abc: Diagnostic plots for ABC
plot.cv4abc: Cross-validation plots for ABC
plot.cv4postpr: Barplot of model misclassification
plot.gfit: Goodness-of-fit plot for ABC
postpr: Estimating posterior model probabilities
summary.abc: Summaries of posterior samples generated by ABC algortithms
summary.cv4abc: Calculates the cross-validation prediction error
summary.cv4postpr: Confusion matrix and misclassification probabilities of...
summary.gfit: Calculates the p-value of the goodness-of-fit test.
summary.postpr: Posterior model probabilities and Bayes factors

Functions

abc Man page Source code
abc.return Man page Source code
cv4abc Man page Source code
cv4postpr Man page Source code
expected.deviance Man page Source code
getmode Man page Source code
gfit Man page Source code
gfitpca Man page Source code
hist.abc Man page Source code
is.abc Source code
is.cv4abc Source code
is.cv4postpr Source code
is.gfit Source code
namesWarningFilter Source code
normalise Source code
plot.abc Man page Source code
plot.cv4abc Man page Source code
plot.cv4postpr Man page Source code
plot.gfit Man page Source code
postpr Man page Source code
print.abc Source code
summary.abc Man page Source code
summary.cv4abc Man page Source code
summary.cv4postpr Man page Source code
summary.gfit Man page Source code
summary.postpr Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/abcvignette.pdf
inst/doc/abcvignette.Rnw
inst/doc/abcvignette.R
NAMESPACE
R
R/gfit.R
R/abc.R
R/postpr.R
R/gfitpca.R
R/cv4postpr.R
R/misc.R
R/expected.deviance.R
R/cv4abc.R
vignettes
vignettes/abcvignette.bib
vignettes/abcvignette.Rnw
vignettes/runms4ppc.R
vignettes/runms.R
MD5
build
build/vignette.rds
DESCRIPTION
man
man/expected.deviance.Rd
man/abc.Rd
man/summary.gfit.Rd
man/gfit.Rd
man/plot.cv4abc.Rd
man/plot.cv4postpr.Rd
man/plot.gfit.Rd
man/hist.abc.Rd
man/cv4postpr.Rd
man/summary.abc.Rd
man/summary.cv4postpr.Rd
man/summary.postpr.Rd
man/postpr.Rd
man/cv4abc.Rd
man/gfitpca.Rd
man/summary.cv4abc.Rd
man/plot.abc.Rd
CHANGES
abc documentation built on May 20, 2017, 4:40 a.m.