BeeGenes: Foraging Gene Expression

In abd: The Analysis of Biological Data

Description

Levels of expression of the foraging gene (for; Expression) in two worker types (type) in three bee colonies (colony). Note that colony is not coded as a factor.

Format

A data frame with 6 observations on the following 3 variables.

type

a factor with levels forager nurse

colony

a numeric identifier

expression

expression level of the for gene

Source

Ben-Shahar, Y., A. Robichon, M.B. Sokolowski, and G.E. Robinson. 2002. Influence of gene action across different time scales on behavior. Science 296: 741-744.

Examples

str(BeeGenes)
BeeGenes
xtabs( expression ~ type + colony, BeeGenes )

Example output

Loading required package: nlme
Loading required package: lattice
Loading required package: grid
Loading required package: mosaic
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:nlme':

    collapse

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: ggformula
Loading required package: ggplot2
Loading required package: ggstance

Attaching package: 'ggstance'

The following objects are masked from 'package:ggplot2':

    GeomErrorbarh, geom_errorbarh


New to ggformula?  Try the tutorials: 
	learnr::run_tutorial("introduction", package = "ggformula")
	learnr::run_tutorial("refining", package = "ggformula")
Loading required package: mosaicData
Loading required package: Matrix

The 'mosaic' package masks several functions from core packages in order to add 
additional features.  The original behavior of these functions should not be affected by this.

Note: If you use the Matrix package, be sure to load it BEFORE loading mosaic.

Attaching package: 'mosaic'

The following object is masked from 'package:Matrix':

    mean

The following object is masked from 'package:ggplot2':

    stat

The following objects are masked from 'package:dplyr':

    count, do, tally

The following objects are masked from 'package:stats':

    IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
    quantile, sd, t.test, var

The following objects are masked from 'package:base':

    max, mean, min, prod, range, sample, sum

'data.frame':	6 obs. of  3 variables:
 $ type      : Factor w/ 2 levels "forager","nurse": 2 1 2 1 2 1
 $ colony    : int  1 1 2 2 3 3
 $ expression: num  0.99 1.93 1 2.36 0.24 1.96
     type colony expression
1   nurse      1       0.99
2 forager      1       1.93
3   nurse      2       1.00
4 forager      2       2.36
5   nurse      3       0.24
6 forager      3       1.96
         colony
type         1    2    3
  forager 1.93 2.36 1.96
  nurse   0.99 1.00 0.24

abd documentation built on May 2, 2019, 2:14 p.m.