HumanGeneLengths: Human Gene Lengths

In abd: The Analysis of Biological Data

Description

Lengths in number of nucleotides (gene.length) for 20,290 human genes

Format

A data frame with 20,290 observations on the following variable.

gene.length

a numeric vector

Source

Hubbard, T., D. Andrews, M. Caccamo, G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. McVicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, A. Ureta-Vidal, J. Vogel, S. White, C. Woodwark, and E. Birne. 2005. Ensembl 2005. Nucleic Acids Research 33: D447-D453.

References

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540092/

http://www.ensembl.org/

Examples

str(HumanGeneLengths)
histogram(~ gene.length, HumanGeneLengths,
          subset = gene.length < 15000)

Example output

Loading required package: nlme
Loading required package: lattice
Loading required package: grid
Loading required package: mosaic
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:nlme':

    collapse

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: ggformula
Loading required package: ggplot2

New to ggformula?  Try the tutorials: 
	learnr::run_tutorial("introduction", package = "ggformula")
	learnr::run_tutorial("refining", package = "ggformula")
Loading required package: mosaicData
Loading required package: Matrix

The 'mosaic' package masks several functions from core packages in order to add 
additional features.  The original behavior of these functions should not be affected by this.

Note: If you use the Matrix package, be sure to load it BEFORE loading mosaic.

Attaching package: 'mosaic'

The following object is masked from 'package:Matrix':

    mean

The following objects are masked from 'package:dplyr':

    count, do, tally

The following objects are masked from 'package:stats':

    IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
    quantile, sd, t.test, var

The following objects are masked from 'package:base':

    max, mean, min, prod, range, sample, sum

'data.frame':	20290 obs. of  1 variable:
 $ gene.length: int  2069 1303 1067 2849 3378 2391 3926 2365 3717 2974 ...

abd documentation built on May 2, 2019, 2:14 p.m.