abdiv: Alpha and Beta Diversity Measures

A collection of measures for measuring ecological diversity. Ecological diversity comes in two flavors: alpha diversity measures the diversity within a single site or sample, and beta diversity measures the diversity across two sites or samples. This package overlaps considerably with other R packages such as 'vegan', 'gUniFrac', 'betapart', and 'fossil'. We also include a wide range of functions that are implemented in software outside the R ecosystem, such as 'scipy', 'Mothur', and 'scikit-bio'. The implementations here are designed to be basic and clear to the reader.

Getting started

Package details

AuthorKyle Bittinger [aut, cre]
MaintainerKyle Bittinger <kylebittinger@gmail.com>
LicenseMIT + file LICENSE
Version0.2.0
URL https://github.com/kylebittinger/abdiv
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("abdiv")

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abdiv documentation built on Jan. 20, 2020, 5:07 p.m.