lozupone_tree: Example data for UniFrac distance
In abdiv: Alpha and Beta Diversity Measures
Description
Usage
Format
Source
Description
This example was used to illustrate unweighted UniFrac distance in Lozupone
and Knight (2005).
Usage
1
2
3
4
5
Format
lozupone_tree is a phylogenetic tree with 14 tips, labeled
A-N. It was created with the ape library.
The data frames lozupone_panel_a and lozupone_panel_b are
transcribed from Figure 1 of the paper. They have the following columns:
- Species
The species label, matching to the phylogenetic tree.
- SampleID
The community, either "Circle" or "Square".
- Counts
-
The number of organisms counted per species, always 1 for this
example.
Source
Lozupone C, Knight R. UniFrac: a new phylogenetic method for
comparing microbial communities. Applied and environmental microbiology.
2005;71(12):8228–8235. 10.1128/AEM.71.12.8228-8235.2005
abdiv documentation built on Jan. 20, 2020, 5:07 p.m.
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Description Usage Format Source
Description
This example was used to illustrate unweighted UniFrac distance in Lozupone and Knight (2005).
Usage
1 2 3 4 5 |
Format
lozupone_tree is a phylogenetic tree with 14 tips, labeled
A-N. It was created with the ape library.
The data frames lozupone_panel_a and lozupone_panel_b are
transcribed from Figure 1 of the paper. They have the following columns:
- Species
The species label, matching to the phylogenetic tree.
- SampleID
The community, either "Circle" or "Square".
- Counts
-
The number of organisms counted per species, always 1 for this example.
Source
Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and environmental microbiology. 2005;71(12):8228–8235. 10.1128/AEM.71.12.8228-8235.2005
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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