API for abemus
Adaptive Base Error Model in Ultra-Deep Sequencing Data
| Global functions | |
|---|---|
| CheckAltReads | Source code |
| abemus | Man page |
| abemus-package | Man page |
| add_class | Source code |
| add_class_xbg | Source code |
| add_names | Source code |
| adjust_af_threshold_table | Source code |
| apply_AF_filters | Source code |
| apply_scaling_factor | Man page Source code |
| bed2positions | Man page Source code |
| bombanel_afs | Man page |
| bombanel_covs | Man page |
| bombanel_tab_cov_pbem | Man page |
| callsnvs | Man page Source code |
| compute_afthreshold | Man page Source code |
| compute_pbem | Man page Source code |
| compute_pbem_allele | Source code |
| define_cov_bins | Source code |
| filter | Source code |
| fromListToDF | Source code |
| get_afth | Source code |
| get_case_mean_coverage | Man page Source code |
| get_germlineset | Source code |
| get_pbem | Source code |
| get_stats_pbem | Source code |
| get_tabcalls_path | Source code |
| get_target_size | Man page Source code |
| import_sif | Source code |
| pos2bperr | Source code |
| split_pacbam_bychrom | Man page Source code |
| strandbias | Source code |
| tab_optimal_R | Man page |
