Nothing
ptest=function(X,Xc, y, f, Bhat, weight.matrix, fc, Phi, W, d0, NPERM=1e3, qrtol)
{
n=nrow(X)
p=ncol(X)
if(d0 > 0) ## used to get Gamhat under null, which is nill when d0=0
{
out.null=solve.exact(Phi=Phi, Bhat=Bhat, d=d0, W=W, qrtol=qrtol)
Pgw=out.null$G%*%t(out.null$Rmat)
Qgw=diag(p)-Pgw
}
## get test statistic
out.alt=solve.exact(Phi=Phi, Bhat=Bhat, d=(d0+1), W=W, qrtol=qrtol)
R.alt = Xc%*%out.alt$Rmat
yhat=pred.pfc(R=t(R.alt), BFt=tcrossprod(out.alt$B, fc), GWG=out.alt$GWG, y=y)
test.stat=mean((y-yhat)^2)
nulldist=NULL
for(i in 1:NPERM)
{
if( d0 > 0)
{
xperm=X%*%t(Pgw) + (X%*%t(Qgw))[sample(n),]
}else
{
xperm=X[sample(n),]
}
permfit=fit.pfc(X=xperm, y=y, d=(d0+1), F.user=f, weight.type=weight.matrix, qrtol=qrtol)
nulldist[i]=mean((y-pred.response(permfit))^2)
}
return(list(stat=test.stat, ndist=nulldist))
}
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