adegenet: Exploratory Analysis of Genetic and Genomic Data
Version 2.0.1

Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.

Getting started

Package details

AuthorThibaut Jombart, Zhian N. Kamvar, Roman Lustrik, Caitlin Collins, Marie- Pauline Beugin, Brian Knaus, Peter Solymos, Klaus Schliep, Ismail Ahmed, Anne Cori, Federico Calboli
Date of publication2016-02-15 16:12:41
MaintainerThibaut Jombart <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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adegenet documentation built on May 29, 2017, 5:54 p.m.