Files in adegenet
Exploratory Analysis of Genetic and Genomic Data

README.md
MD5
ChangeLog
NAMESPACE
DESCRIPTION
data/hybridtoy.RData
data/rupica.RData
data/datalist
data/eHGDP.rda
data/dapcIllus.rda
data/nancycats.rda
data/H3N2.rda
data/microbov.rda
data/sim2pop.rda
data/swallowtails.rda
data/spcaIllus.rda
man/fasta2genlight.Rd man/web.Rd man/makefreq.Rd man/spcaIllus.Rd man/genpop.Rd man/dapcGraphics.Rd man/compoplot.Rd man/haploGen.Rd man/sim2pop.Rd man/import2genind.Rd man/sequences.Rd man/hybridize.Rd man/export_to_mvmapper.Rd man/glPlot.Rd man/dapcIllus.Rd man/read.genepop.Rd man/glAux.Rd man/KIC.Rd man/xvalDapc.Rd man/genind2df.Rd man/read.structure.Rd man/tab.Rd man/read.PLINK.Rd man/read.fstat.Rd man/colorplot.Rd man/snpzip.rd man/AIC.snapclust.Rd man/glPca.Rd man/minorAllele.Rd man/snapclust.Rd man/df2genind.Rd man/Hs.test.Rd man/spca_randtest.Rd man/propShared.Rd man/fasta2DNAbin.Rd man/propTyped.Rd man/seqTrack.Rd man/genlight.Rd man/hierarchy-methods.Rd man/snapclust.choose.k.Rd man/genind.Rd man/microbov.Rd man/HWE.Rd man/virClasses.Rd man/dist.genpop.Rd man/Hs.Rd man/servers.Rd man/ascore.Rd man/find.clusters.Rd man/showmekittens.Rd man/spca.Rd man/pairDist.Rd man/old2new.Rd man/gengraph.Rd man/read.genetix.Rd man/truenames.Rd man/chooseCN.Rd man/new.genind.Rd man/glSim.Rd man/accessors.Rd man/genind2genpop.Rd man/selpopsize.Rd man/eHGDP.Rd man/repool.Rd man/isPoly.Rd man/mutations.Rd man/as.genlight.Rd man/as.SNPbin.Rd man/dapc.Rd man/read.snp.Rd man/AICc.Rd man/inbreeding.Rd man/as-methods.Rd man/H3N2.Rd man/adegenet.package.Rd man/population-methods.Rd man/loadingplot.Rd man/seploc.Rd man/nancycats.Rd man/seppop.Rd man/scaleGen.Rd man/rupica.Rd man/coords.monmonier.Rd man/strata-methods.Rd man/SNPbin.Rd man/spca.rtests.Rd man/hybridtoy.Rd man/new.genpop.Rd man/monmonier.Rd man/snpposi.Rd man/doc_C_routines.Rd man/BIC.snapclust.Rd man/auxil.Rd
src/snpbin.h
src/sharedAll.c
src/GLfunctions.h
src/monmonier-utils.c
src/adesub.c
src/GLfunctions.c
src/init.c
src/snpbin.c
src/adesub.h
tests/testthat.R tests/testthat/test_snapclust.R tests/testthat/test_constructors.R tests/testthat/test_repool.R tests/testthat/test_import.R tests/testthat/test-prop.R tests/testthat/test_accessors.R tests/testthat/test_summary.R tests/testthat/test-findclust.R tests/testthat/test_haploGen.R tests/testthat/test_genlight.R tests/testthat/test_compoplot.R tests/testthat/test-seppop.R tests/testthat/test_xval.R tests/testthat/test_hierarchy.R tests/testthat/test_subset.R R/AICc.snapclust.R R/seqTrack.R R/colorplot.R R/loadingplot.R R/constructors.R R/KIC.snapclust.R R/showmekittens.R R/Hs.R R/dist.genlight.R R/AIC.snapclust.R R/glPlot.R R/old2new.R R/adegenet.package.R R/glSim.R R/strataMethods.R R/xvalDapc.R R/PCtest.R R/hierarchyMethods.R R/propShared.R R/datasets.R R/basicMethods.R R/hybridize.R R/chooseCN.R R/compoplot.R R/zzz.R R/dist.genpop.R R/orthobasis.R R/scale.R R/propTyped.R R/monmonier.R R/import.R R/snapclust.choose.k.R R/gengraph.R R/snpposi.R R/fstat.R R/snpzip.R R/glFunctions.R R/SNPbin.R R/gstat.randtest.R R/makefreq.R R/sequences.R R/snapclust.R R/export.R R/spca_randtest.R R/classes.R R/pairDist.R R/HWE.R R/auxil.R R/BIC.snapclust.R R/spca.R R/dapc.R R/minorAllele.R R/haploPop.R R/servers.R R/inbreeding.R R/mutations.R R/coords.monmonier.R R/glHandle.R R/handling.R R/genind2genpop.R R/simOutbreak.R R/doc_C_routines.R R/export_to_mvmapper.R R/setAs.R R/accessors.R R/find.clust.R R/haploGen.R R/global_local_tests.R
inst/CITATION
inst/files/AFLP.txt
inst/files/pdH1N1-HA.fasta
inst/files/nancycats.gen
inst/files/pdH1N1-NA.fasta
inst/files/pdH1N1-data.csv
inst/files/mondata2.rda
inst/files/nancycats.str
inst/files/mondata1.rda
inst/files/nancycats.gtx
inst/files/swallowtails_loc.csv
inst/files/usflu.fasta
inst/files/nancycats.dat
inst/files/exampleSnpDat.snp
inst/dapcServer/server.R inst/dapcServer/ui.R
adegenet documentation built on Feb. 3, 2018, 1:01 a.m.