swallowtails | R Documentation |
This data set gives the genotypes of 781 swallowtail butterflies (Papilio machaon species group) for 10 microsatellites markers. The individuals are divided into 40 populations.
swallowtails
is a genind object containing 781 individuals,
10 microsatellite markers, and 40 populations.
Julian Dupuis (University of Hawaii, USA)
Dupuis, J.R. & Sperling, F.A.H. Hybrid dynamics in a species group of swallowtail butterflies. Journal of Evolutionary Biology, 10, 1932–1951.
## Not run: data(swallowtails) swallowtails # conducting a DAPC (n.pca determined using xvalDapc, see ??xvalDapc) dapc1 <- dapc(swallowtails, n.pca=40, n.da=200) # read in swallowtails_loc.csv, which contains "key", "lat", and "lon" # columns with column headers (this example contains additional columns # containing species identifications, locality descriptions, and COI # haplotype clades) input_locs <- system.file("files/swallowtails_loc.csv", package = "adegenet") loc <- read.csv(input_locs, header = TRUE) # generate mvmapper input file, automatically write the output to a csv, and # name the output csv "mvMapper_Data.csv" out <- export_to_mvmapper(dapc1, loc, write_file = TRUE, out_file = "mvMapper_Data.csv") ## End(Not run)
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