genind2df | R Documentation |
The function genind2df
converts a genind back to a
data.frame of raw allelic data.
genind2df(x, pop = NULL, sep = "", usepop = TRUE, oneColPerAll = FALSE)
x |
a genind object |
pop |
an optional factor giving the population of each individual. |
sep |
a character string separating alleles. See details. |
usepop |
a logical stating whether the population (argument |
oneColPerAll |
a logical stating whether or not alleles should be split
into columns (defaults to |
a data.frame of raw allelic data, with individuals in rows and loci in column
Thibaut Jombart t.jombart@imperial.ac.uk
df2genind
, import2genind
, read.genetix
,
read.fstat
, read.structure
## simple example df <- data.frame(locusA=c("11","11","12","32"), locusB=c(NA,"34","55","15"),locusC=c("22","22","21","22")) row.names(df) <- .genlab("genotype",4) df obj <- df2genind(df, ploidy=2, ncode=1) obj obj@tab ## converting a genind as data.frame genind2df(obj) genind2df(obj, sep="/")
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