selpopsize: Select genotypes of well-represented populations

In adegenet: Exploratory Analysis of Genetic and Genomic Data

Select genotypes of well-represented populations

Description

The function selPopSize checks the sample size of each population in a genind object and keeps only genotypes of populations having a given minimum size.

Usage

## S4 method for signature 'genind'
selPopSize(x,pop=NULL,nMin=10)

Arguments

x	a genind object
pop	a vector of characters or a factor giving the population of each genotype in 'x'. If not provided, seeked from x$pop.
nMin	the minimum sample size for a population to be retained. Samples sizes strictly less than nMin will be discarded, those equal to or greater than nMin are kept.

Value

A genind object.

Author(s)

Thibaut Jombart [e-mail]

See Also

seploc, repool

Examples

## Not run: 
data(microbov)

table(pop(microbov))
obj <- selPopSize(microbov, n=50)

obj
table(pop(obj))

## End(Not run)

adegenet documentation built on April 4, 2025, 1:15 a.m.