minorAllele: Compute minor allele frequency
In adegenet: Exploratory Analysis of Genetic and Genomic Data
minorAllele R Documentation
Compute minor allele frequency
Description
This function computes the minor allele frequency for each locus in a genind object. To test if loci are polymorphic, see the function isPoly.
Usage
minorAllele(x)
Arguments
x
a genind object
Author(s)
Thibaut Jombart t.jombart@imperial.ac.uk
See Also
isPoly
Examples
## Not run:
## LOAD DATA
data(nancycats)
## COMPUTE ALLELE FREQUENCIES
x <- nancycats
apply(tab(x, freq=TRUE),2,mean, na.rm=TRUE)
## GET MINOR ALLELE FREQUENCY
m.freq <- minorAllele(x)
m.freq
## End(Not run)
adegenet documentation built on Feb. 16, 2023, 6 p.m.
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| minorAllele | R Documentation |
Compute minor allele frequency
Description
This function computes the minor allele frequency for each locus in a genind object. To test if loci are polymorphic, see the function isPoly.
Usage
minorAllele(x)
Arguments
x |
a genind object |
Author(s)
Thibaut Jombart t.jombart@imperial.ac.uk
See Also
isPoly
Examples
## Not run: ## LOAD DATA data(nancycats) ## COMPUTE ALLELE FREQUENCIES x <- nancycats apply(tab(x, freq=TRUE),2,mean, na.rm=TRUE) ## GET MINOR ALLELE FREQUENCY m.freq <- minorAllele(x) m.freq ## End(Not run)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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