filter_not_exist: Returns records that don't fit into existing by groups in a...

In admiral: ADaM in R Asset Library

Returns records that don't fit into existing by groups in a filtered source dataset

Description

Returns all records in the input dataset that belong to by groups that are not present in a source dataset, after the source dataset is optionally filtered. For example, this could be used to return ADSL records for subjects that didn't take certain concomitant medications during the course of the study (as per records in ADCM).

Usage

filter_not_exist(dataset, dataset_add, by_vars, filter_add = NULL)

Arguments

dataset	Input dataset The variables specified by the by_vars argument are expected to be in the dataset.
dataset_add	Source dataset The source dataset, which determines the by groups returned in the input dataset, based on the groups that don't exist in this dataset after being subset by filter_add. The variables specified in the by_vars and filter_add parameters are expected in this dataset.
by_vars	Grouping variables Permitted Values: list of variables created by exprs() e.g. exprs(USUBJID, VISIT)
filter_add	Filter for the source dataset The filter condition which will be used to subset the source dataset. Alternatively, if no filter condition is supplied, no subsetting of the source dataset will be performed. Default: NULL (i.e. no filtering will be performed)

Details

Returns the records in dataset which don't match any existing by groups in dataset_add, after being filtered according to filter_add. If all by groups that exist in dataset don't exist in dataset_add, an empty dataset will be returned.

Value

The records in the input dataset which are not contained within any existing by group in the filtered source dataset.

See Also

Utilities for Filtering Observations: count_vals(), filter_exist(), filter_extreme(), filter_joined(), filter_relative(), max_cond(), min_cond()

Examples

# Get demographic information about subjects who didn't take vitamin supplements
# during the study

library(tibble)

adsl <- tribble(
  ~USUBJID,      ~AGE, ~SEX,
  "01-701-1015", 63,   "F",
  "01-701-1023", 64,   "M",
  "01-701-1034", 77,   "F",
  "01-701-1118", 52,   "M"
)

adcm <- tribble(
  ~USUBJID,      ~CMTRT,         ~CMSTDTC,
  "01-701-1015", "ASPIRIN",      "2013-05-14",
  "01-701-1023", "MYLANTA",      "2014-01-04",
  "01-701-1023", "CALCIUM",      "2014-02-25",
  "01-701-1034", "VITAMIN C",    "2013-12-12",
  "01-701-1034", "CALCIUM",      "2013-03-27",
  "01-701-1118", "MULTIVITAMIN", "2013-02-21"
)

filter_not_exist(
  dataset = adsl,
  dataset_add = adcm,
  by_vars = exprs(USUBJID),
  filter_add = str_detect(CMTRT, "VITAMIN")
)

admiral documentation built on June 22, 2024, 9:06 a.m.