Man pages for admixr
An Interface for Running 'ADMIXTOOLS' Analyses
| count_snps | Count the number/proportion of present/missing sites in each... |
| download_data | Download example SNP data. |
| eigenstrat | EIGENSTRAT data constructor |
| f4ratio | Calculate the D, f4, f4-ratio, or f3 statistic. |
| filter_bed | Filter EIGENSTRAT data based on a given BED file |
| keep_transitions | Remove transversions (C->T and G->A substitutions) |
| loginfo | Print the full log output of an admixr wrapper to the... |
| merge_eigenstrat | Merge two sets of EIGENSTRAT datasets |
| pipe | Pipe operator |
| print.admixr_result | Print out the admixr result object (dataframe or a list)... |
| print.EIGENSTRAT | EIGENSTRAT print method |
| qpAdm | Calculate ancestry proportions in a set of target... |
| qpAdm_filter | Filter qpAdm rotation results for only 'sensible' models |
| qpAdm_rotation | Fit qpAdm models based on the rotation strategy described in... |
| qpWave | Find the most likely number of ancestry waves using the... |
| read_ind | Read an EIGENSTRAT ind/snp/geno file. |
| read_output | Read an output file from one of the ADMIXTOOLS programs. |
| relabel | Change labels of populations or samples |
| reset | Reset modifications to an EIGENSTRAT object |
| transversions_only | Remove transversions (C->T and G->A substitutions) |
| write_ind | Write an EIGENSTRAT ind/snp/geno file. |
