reset: Reset modifications to an EIGENSTRAT object

In admixr: An Interface for Running 'ADMIXTOOLS' Analyses

Description

Set 'exclude' and 'group' modifications of snp and ind files, effectively resetting the dataset into its original state.

Usage

reset(data)

Arguments

data	EIGENSTRAT data object.

Value

EIGENSTRAT data S3 object.

Examples

## Not run: # download an example genomic data set and prepare it for analysis
snps <- eigenstrat(download_data(dirname = tempdir()))

# group individual samples into larger populations, creating a new
# EIGENSTRAT R object
new_snps <- relabel(
    snps,
    European = c("French", "Sardinian"),
    African = c("Dinka", "Yoruba", "Mbuti", "Khomani_San"),
    Archaic = c("Vindija", "Altai", "Denisova")
)

# remove the population grouping in the previous step - this
# results in the same EIGENSTRAT object tht we started with
original_snps <- reset(new_snps)

## End(Not run)

admixr documentation built on July 8, 2020, 6:19 p.m.