loginfo: Print the full log output of an admixr wrapper to the...

In admixr: An Interface for Running 'ADMIXTOOLS' Analyses

Description

Print the full log output of an admixr wrapper to the console.

Usage

loginfo(x, target = NA, save = FALSE, prefix = NA, dir = ".", suffix = ".txt")

Arguments

x	Output from one of the admixr wrappers (d, f4, qpAdm, ...)
target	A specific log to examine (relevant for multiple target qpAdm runs)
save	Save the log output to a disk?
prefix	Prefix of the output log file(s) (name of the admixr command by default)
dir	In which directory to save the log file(s)?
suffix	Suffix of the output log file(s) (".txt" by default)

Examples

## Not run: # download an example genomic data set and prepare it for analysis
snps <- eigenstrat(download_data(dirname = tempdir()))

# define a set of populations to analyze and calculate a D statistic
pops <- c("French", "Sardinian", "Han", "Papuan", "Khomani_San", "Mbuti", "Dinka")
result_d <- d(
    W = pops, X = "Yoruba", Y = "Vindija", Z = "Chimp",
    data = snps
)

# examine the full log output associated with the returned object
loginfo(result_d)

## End(Not run)

admixr documentation built on July 8, 2020, 6:19 p.m.