algstat: Algebraic statistics in R
Version 0.0.2

algstat provides functionality for algebraic statistics in R. Current applications include exact inference in log-linear models for contingency table data, analysis of ranked and partially ranked data, and general purpose tools for multivariate polynomials, building on the mpoly package. To aid in the process, algstat has ports to Macaulay2, Bertini, LattE-integrale and 4ti2.

Browse man pages Browse package API and functions Browse package files

AuthorDavid Kahle [aut, cre], Luis Garcia-Puente [aut]
Date of publication2014-12-06 02:23:38
MaintainerDavid Kahle <david.kahle@gmail.com>
LicenseGPL-2
Version0.0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("algstat")

Man pages

abortion: Haberman's Abortion, Education, and Religion Data
algstat: algstat : Algebraic statistics in R
Amaker: Distance transitive matrix
bertini: Evaluate Bertini Code
bump: Convert Dimensions of Approval Data
city: Living Location Preference Dataset
condorcet: Find a Condorcet Choice.
cookie: Girl Scout Cookie Preferences
count: Count Integer Points in a Polytope
countTables: Count Similarly Margined Contingency Tables
drugs: Use of Alcohol, Cigarettes, and Marijuana by High School...
Emaker: Create the expected higher-order statistics calculating...
haberman: Haberman's Positive Margin no Three-way Interaction MLE
handy: Handedness Data
hierarchical: Fitting Hierarchical Log-linear Models with Algebraic Methods
hmat: Construct a Hierarchical Model Matrix
is.bertini: Bertini Object Check
is.linear: Test whether an mpoly object is linear.
is.m2: Macaulay2 Object Check
kprod: Iterated Kronecker product
latteMax: Solve a Linear Program (Maximization)
latteMin: Solve a Linear Program (Minimization)
lower: Create a lower triangular matrix
lpnorm: Lp Norm
m2: Evaluate Macaulay2 Code
markov: Compute a Markov Basis with 4ti2
mchoose: Multinomial Coefficient
metropolis: Markov Basis Metropolis-Hastings Algorithm
Mmaker: Marginals matrix
ones: Ones Vector
Pmaker: Pairs matrix
politicalGoals: Relative Rankings of Importance of Four Political Goals
politics: Politics by Personality
polyOptim: Polynomial Optimization
polySolve: Solve a System of Polynomial Equations
print.bertini: Pretty Printing of Bertini Output
print.hierarchical: Pretty Printing of Hierarchical's Output
print.m2: Pretty printing of Macaulay2 output.
print.polyOptim: Pretty printing of polyOptim (Bertini) output.
print.spectral: Pretty Printing of Spectral's Output
print.tableau: Pretty printing of tableau output.
projectOnto: Vector Projection onto col(A)
projectOntoPerp: Vector Projection onto the orthogonal complement of col(A)
rvotes: Random Spectral Data
setBertiniPath: Set Bertini Path
setLattePath: Set LattE Path
setM2Path: Set Macaulay2 Path
setMarkovPath: Set 4ti2 Path
Smaker: Means matrix (rank data)
spectral: Analyze a Rank Dataset
subsets: Compute Subsets
summary.bertini: Summarize Bertini Output
tab2vec: Array to Vector conversion
tableau: Tableau Notation for Markov
teshape: Interconvert data structures
Tmaker: Create the sufficient statistics calculating matrix for...
Umaker: U matrix (rank data)
upper: Create an upper triangular matrix
variety: Compute a Variety
vec2tab: Vector to Array conversion

Functions

Amaker Man page Source code
Emaker Man page Source code
Mmaker Man page Source code
Pmaker Man page Source code
Smaker Man page Source code
Tmaker Man page Source code
Umaker Man page Source code
abortion Man page
algstat Man page
algstat-package Man page
bertini Man page Source code
bump Man page Source code
check_for_4ti2 Source code
check_for_bertini Source code
check_for_latte Source code
check_for_m2 Source code
city Man page
computeCRsCpp Source code
computeG2sCpp Source code
computeNMsCpp Source code
computeUProbsCpp Source code
computeX2sCpp Source code
condorcet Man page Source code
containsQ Source code
cookie Man page
count Man page Source code
countTables Man page Source code
drugs Man page
file.path2 Source code
haberman Man page
handy Man page
hierarchical Man page Source code
hmat Man page Source code
is.bertini Man page Source code
is.linear Man page Source code
is.m2 Man page Source code
is.mac Source code
is.subset Source code
is.unix Source code
is.win Source code
kprod Man page Source code
latteMax Man page Source code
latteMin Man page Source code
lower Man page Source code
lpnorm Man page Source code
m2 Man page Source code
markov Man page Source code
mchoose Man page Source code
metropolis Man page Source code
metropolisCpp Source code
mpolyListToMat Source code
onAttach Source code
ones Man page Source code
package-algstat Man page
parse_bertini_failed_paths Source code
parse_bertini_finite_solutions Source code
parse_bertini_midpath_data Source code
parse_bertini_nonsingular_solutions Source code
parse_bertini_raw_solutions Source code
parse_bertini_real_finite_solutions Source code
parse_bertini_singular_solutions Source code
parse_bertini_start Source code
politicalGoals Man page
politics Man page
polyOptim Man page Source code
polySolve Man page Source code
print.bertini Man page Source code
print.hierarchical Man page Source code
print.m2 Man page Source code
print.polyOptim Man page Source code
print.spectral Man page Source code
print.tableau Man page Source code
projectOnto Man page Source code
projectOntoPerp Man page Source code
rvotes Man page Source code
setBertiniPath Man page Source code
setLattePath Man page Source code
setM2Path Man page Source code
setMarkovPath Man page Source code
spectral Man page Source code
subsetNumber2vec Source code
subsets Man page Source code
summary.bertini Man page Source code
tab2vec Man page Source code
tableau Man page Source code
teshape Man page Source code
upper Man page Source code
variety Man page Source code
vec2subsetNumber Source code
vec2tab Man page Source code
whereis_is_accessible Source code

Files

inst
inst/INSTALL.txt
src
src/computeUProbsCpp.cpp
src/computeNMsCpp.cpp
src/metropolisCpp.cpp
src/computeG2sCpp.cpp
src/computeX2sCpp.cpp
src/RcppExports.cpp
src/computeCRsCpp.cpp
NAMESPACE
NEWS
data
data/handy.rda
data/city.rda
data/drugs.rda
data/politics.rda
data/haberman.rda
data/politicalGoals.rda
data/cookie.rda
data/abortion.rda
R
R/handy.r
R/politics.r
R/print.spectral.r
R/teshape.r
R/markov.r
R/paths.r
R/condorcet.r
R/polySolve.r
R/drugs.r
R/polyOptim.r
R/tableau.r
R/bump.r
R/print.hierarchical.r
R/help.r
R/bertini.r
R/countTables.r
R/politicalGoals.r
R/tab2vec.r
R/cookie.r
R/latteMax.r
R/print.polyOptim.r
R/is.bertini.r
R/is.linear.r
R/print.m2.r
R/RcppExports.R
R/latteMin.r
R/variety.r
R/spectral.r
R/haberman.r
R/metropolis.r
R/zzz.r
R/summary.bertini.r
R/city.r
R/print.bertini.r
R/count.r
R/hierarchical.r
R/subsets.r
R/m2.r
R/abortion.r
R/helpers.r
R/is.m2.r
R/makers.r
R/hmat.r
MD5
DESCRIPTION
man
man/teshape.Rd
man/haberman.Rd
man/summary.bertini.Rd
man/handy.Rd
man/print.hierarchical.Rd
man/tab2vec.Rd
man/politics.Rd
man/subsets.Rd
man/polySolve.Rd
man/Mmaker.Rd
man/ones.Rd
man/abortion.Rd
man/projectOntoPerp.Rd
man/condorcet.Rd
man/print.spectral.Rd
man/setLattePath.Rd
man/print.tableau.Rd
man/countTables.Rd
man/setM2Path.Rd
man/rvotes.Rd
man/Pmaker.Rd
man/drugs.Rd
man/Umaker.Rd
man/lower.Rd
man/setBertiniPath.Rd
man/Smaker.Rd
man/is.m2.Rd
man/cookie.Rd
man/lpnorm.Rd
man/hierarchical.Rd
man/print.polyOptim.Rd
man/print.m2.Rd
man/is.linear.Rd
man/latteMax.Rd
man/polyOptim.Rd
man/politicalGoals.Rd
man/markov.Rd
man/projectOnto.Rd
man/bertini.Rd
man/city.Rd
man/m2.Rd
man/spectral.Rd
man/algstat.Rd
man/is.bertini.Rd
man/bump.Rd
man/Amaker.Rd
man/variety.Rd
man/setMarkovPath.Rd
man/hmat.Rd
man/Tmaker.Rd
man/count.Rd
man/print.bertini.Rd
man/kprod.Rd
man/upper.Rd
man/Emaker.Rd
man/tableau.Rd
man/latteMin.Rd
man/mchoose.Rd
man/metropolis.Rd
man/vec2tab.Rd
algstat documentation built on May 19, 2017, 9:06 p.m.