algstat: Algebraic statistics in R

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algstat provides functionality for algebraic statistics in R. Current applications include exact inference in log-linear models for contingency table data, analysis of ranked and partially ranked data, and general purpose tools for multivariate polynomials, building on the mpoly package. To aid in the process, algstat has ports to Macaulay2, Bertini, LattE-integrale and 4ti2.

Author
David Kahle [aut, cre], Luis Garcia-Puente [aut]
Date of publication
2014-12-06 02:23:38
Maintainer
David Kahle <david.kahle@gmail.com>
License
GPL-2
Version
0.0.2

View on CRAN

Man pages

abortion
Haberman's Abortion, Education, and Religion Data
algstat
algstat : Algebraic statistics in R
Amaker
Distance transitive matrix
bertini
Evaluate Bertini Code
bump
Convert Dimensions of Approval Data
city
Living Location Preference Dataset
condorcet
Find a Condorcet Choice.
cookie
Girl Scout Cookie Preferences
count
Count Integer Points in a Polytope
countTables
Count Similarly Margined Contingency Tables
drugs
Use of Alcohol, Cigarettes, and Marijuana by High School...
Emaker
Create the expected higher-order statistics calculating...
haberman
Haberman's Positive Margin no Three-way Interaction MLE
handy
Handedness Data
hierarchical
Fitting Hierarchical Log-linear Models with Algebraic Methods
hmat
Construct a Hierarchical Model Matrix
is.bertini
Bertini Object Check
is.linear
Test whether an mpoly object is linear.
is.m2
Macaulay2 Object Check
kprod
Iterated Kronecker product
latteMax
Solve a Linear Program (Maximization)
latteMin
Solve a Linear Program (Minimization)
lower
Create a lower triangular matrix
lpnorm
Lp Norm
m2
Evaluate Macaulay2 Code
markov
Compute a Markov Basis with 4ti2
mchoose
Multinomial Coefficient
metropolis
Markov Basis Metropolis-Hastings Algorithm
Mmaker
Marginals matrix
ones
Ones Vector
Pmaker
Pairs matrix
politicalGoals
Relative Rankings of Importance of Four Political Goals
politics
Politics by Personality
polyOptim
Polynomial Optimization
polySolve
Solve a System of Polynomial Equations
print.bertini
Pretty Printing of Bertini Output
print.hierarchical
Pretty Printing of Hierarchical's Output
print.m2
Pretty printing of Macaulay2 output.
print.polyOptim
Pretty printing of polyOptim (Bertini) output.
print.spectral
Pretty Printing of Spectral's Output
print.tableau
Pretty printing of tableau output.
projectOnto
Vector Projection onto col(A)
projectOntoPerp
Vector Projection onto the orthogonal complement of col(A)
rvotes
Random Spectral Data
setBertiniPath
Set Bertini Path
setLattePath
Set LattE Path
setM2Path
Set Macaulay2 Path
setMarkovPath
Set 4ti2 Path
Smaker
Means matrix (rank data)
spectral
Analyze a Rank Dataset
subsets
Compute Subsets
summary.bertini
Summarize Bertini Output
tab2vec
Array to Vector conversion
tableau
Tableau Notation for Markov
teshape
Interconvert data structures
Tmaker
Create the sufficient statistics calculating matrix for...
Umaker
U matrix (rank data)
upper
Create an upper triangular matrix
variety
Compute a Variety
vec2tab
Vector to Array conversion

Files in this package

algstat
algstat/inst
algstat/inst/INSTALL.txt
algstat/src
algstat/src/computeUProbsCpp.cpp
algstat/src/computeNMsCpp.cpp
algstat/src/metropolisCpp.cpp
algstat/src/computeG2sCpp.cpp
algstat/src/computeX2sCpp.cpp
algstat/src/RcppExports.cpp
algstat/src/computeCRsCpp.cpp
algstat/NAMESPACE
algstat/NEWS
algstat/data
algstat/data/handy.rda
algstat/data/city.rda
algstat/data/drugs.rda
algstat/data/politics.rda
algstat/data/haberman.rda
algstat/data/politicalGoals.rda
algstat/data/cookie.rda
algstat/data/abortion.rda
algstat/R
algstat/R/handy.r
algstat/R/politics.r
algstat/R/print.spectral.r
algstat/R/teshape.r
algstat/R/markov.r
algstat/R/paths.r
algstat/R/condorcet.r
algstat/R/polySolve.r
algstat/R/drugs.r
algstat/R/polyOptim.r
algstat/R/tableau.r
algstat/R/bump.r
algstat/R/print.hierarchical.r
algstat/R/help.r
algstat/R/bertini.r
algstat/R/countTables.r
algstat/R/politicalGoals.r
algstat/R/tab2vec.r
algstat/R/cookie.r
algstat/R/latteMax.r
algstat/R/print.polyOptim.r
algstat/R/is.bertini.r
algstat/R/is.linear.r
algstat/R/print.m2.r
algstat/R/RcppExports.R
algstat/R/latteMin.r
algstat/R/variety.r
algstat/R/spectral.r
algstat/R/haberman.r
algstat/R/metropolis.r
algstat/R/zzz.r
algstat/R/summary.bertini.r
algstat/R/city.r
algstat/R/print.bertini.r
algstat/R/count.r
algstat/R/hierarchical.r
algstat/R/subsets.r
algstat/R/m2.r
algstat/R/abortion.r
algstat/R/helpers.r
algstat/R/is.m2.r
algstat/R/makers.r
algstat/R/hmat.r
algstat/MD5
algstat/DESCRIPTION
algstat/man
algstat/man/teshape.Rd
algstat/man/haberman.Rd
algstat/man/summary.bertini.Rd
algstat/man/handy.Rd
algstat/man/print.hierarchical.Rd
algstat/man/tab2vec.Rd
algstat/man/politics.Rd
algstat/man/subsets.Rd
algstat/man/polySolve.Rd
algstat/man/Mmaker.Rd
algstat/man/ones.Rd
algstat/man/abortion.Rd
algstat/man/projectOntoPerp.Rd
algstat/man/condorcet.Rd
algstat/man/print.spectral.Rd
algstat/man/setLattePath.Rd
algstat/man/print.tableau.Rd
algstat/man/countTables.Rd
algstat/man/setM2Path.Rd
algstat/man/rvotes.Rd
algstat/man/Pmaker.Rd
algstat/man/drugs.Rd
algstat/man/Umaker.Rd
algstat/man/lower.Rd
algstat/man/setBertiniPath.Rd
algstat/man/Smaker.Rd
algstat/man/is.m2.Rd
algstat/man/cookie.Rd
algstat/man/lpnorm.Rd
algstat/man/hierarchical.Rd
algstat/man/print.polyOptim.Rd
algstat/man/print.m2.Rd
algstat/man/is.linear.Rd
algstat/man/latteMax.Rd
algstat/man/polyOptim.Rd
algstat/man/politicalGoals.Rd
algstat/man/markov.Rd
algstat/man/projectOnto.Rd
algstat/man/bertini.Rd
algstat/man/city.Rd
algstat/man/m2.Rd
algstat/man/spectral.Rd
algstat/man/algstat.Rd
algstat/man/is.bertini.Rd
algstat/man/bump.Rd
algstat/man/Amaker.Rd
algstat/man/variety.Rd
algstat/man/setMarkovPath.Rd
algstat/man/hmat.Rd
algstat/man/Tmaker.Rd
algstat/man/count.Rd
algstat/man/print.bertini.Rd
algstat/man/kprod.Rd
algstat/man/upper.Rd
algstat/man/Emaker.Rd
algstat/man/tableau.Rd
algstat/man/latteMin.Rd
algstat/man/mchoose.Rd
algstat/man/metropolis.Rd
algstat/man/vec2tab.Rd