convert_cytoscape_to_aop: Convert Cytoscape Graph to an AOP
In aop: Adverse Outcome Pathway Analysis

Description Usage Arguments Details Value Examples

Converts a cytoscape JSON file to an aop_cytoscape-class object.

1	convert_cytoscape_to_aop(file)

file

a Cytoscape JSON file.

This function converts a JSON file exported from Cytoscape into a aop_cytoscape-class object. Once an aop_cytoscape-class object, we can perform conversion to a graphNEL object, and then perform graph-based analyses.

aop a aop_cytoscape-class object.

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steatosis_json_file <- system.file("extdata", "steatosis_aop_json.cyjs",
package = "aop")
steatosis_aop <- convert_cytoscape_to_aop(steatosis_json_file)