The TotalCnKernelSmoothing class

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Description

Package: aroma.cn
Class TotalCnKernelSmoothing

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--TotalCnSmoothing
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--TotalCnKernelSmoothing

Directly known subclasses:

public static class TotalCnKernelSmoothing
extends TotalCnSmoothing

Usage

1
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TotalCnKernelSmoothing(..., kernel=c("gaussian", "uniform"), bandwidth=50000, censorH=3,
  robust=FALSE)

Arguments

...

Arguments passed to TotalCnSmoothing.

kernel

A character string specifying the type of kernel to be used.

bandwidth

A double specifying the bandwidth of the smoothing.

censorH

A positive double specifying the bandwidth threshold where values outside are ignored (zero weight).

robust

If TRUE, a robust smoother is used, otherwise not.

Fields and Methods

Methods:
No methods defined.

Methods inherited from TotalCnSmoothing:
getAsteriskTags, getOutputDataSet0, getOutputFileClass, getOutputFileExtension, getOutputFileSetClass, getOutputFiles, getParameters, getPath, getRootPath, getTargetPositions, getTargetUgpFile, process, smoothRawCopyNumbers

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

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