The abstract TotalCnSmoothing class

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Description

Package: aroma.cn
Class TotalCnSmoothing

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--TotalCnSmoothing

Directly known subclasses:
TotalCnBinnedSmoothing, TotalCnKernelSmoothing

public abstract static class TotalCnSmoothing
extends AromaTransform

Usage

1
2
TotalCnSmoothing(dataSet=NULL, ..., targetUgp=NULL,
  .reqSetClass="AromaUnitTotalCnBinarySet")

Arguments

dataSet

An AromaUnitTotalCnBinarySet.

...

Arguments passed to AromaTransform.

targetUgp

An AromaUgpFile specifying the target loci for which smoothed copy-number are generated.

.reqSetClass

(internal only)

Fields and Methods

Methods:

getTargetUgpFile -
process -

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

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