API for atlantistools
Process and Visualise Output from Atlantis Models

Global functions
\%>\%	Man page
add_fliped_layers	Source code
agg_data	Man page Source code
agg_perc	Man page Source code
bib_to_df	Source code
calculate_biomass_spatial	Man page Source code
calculate_consumed_biomass	Man page Source code
calculate_spatial_overlap	Man page Source code
change_avail	Man page Source code
change_prm	Man page Source code
change_prm_cohort	Man page Source code
change_theme	Source code
check_df_names	Man page Source code
check_growth	Man page Source code
combine_ages	Man page Source code
combine_groups	Man page Source code
combine_runs	Man page Source code
convert_bgm	Man page Source code
convert_factor	Man page Source code
convert_relative_initial	Man page Source code
convert_time	Man page Source code
custom_grid	Man page Source code
custom_map	Source code
custom_wrap	Source code
extract_prm	Man page Source code
extract_prm_cohort	Man page Source code
file_ending	Source code
fishbase_data	Man page
flip_layers	Man page Source code
get_acronyms	Man page Source code
get_age_acronyms	Man page Source code
get_age_groups	Man page Source code
get_boundary	Man page Source code
get_colpal	Man page Source code
get_conv_mgnbiot	Man page Source code
get_diet_fishbase	Man page Source code
get_fcs_fishbase	Source code
get_fish_acronyms	Man page Source code
get_groups	Man page Source code
get_growth_fishbase	Man page Source code
get_ids_fishbase	Man page Source code
get_info_fishbase	Source code
get_layerid	Source code
get_layers	Source code
get_maturity_fishbase	Man page Source code
get_nonage_acronyms	Man page Source code
get_ref_fishbase	Man page Source code
ggplot_custom	Source code
group_data	Man page Source code
load_box	Man page Source code
load_bps	Man page Source code
load_dietcheck	Man page Source code
load_dietmatrix	Man page Source code
load_fgs	Man page Source code
load_init	Man page Source code
load_init_age	Man page Source code
load_init_nonage	Man page Source code
load_init_physics	Man page Source code
load_init_stanza	Man page Source code
load_init_weight	Man page Source code
load_nc	Man page Source code
load_nc_physics	Man page Source code
load_rec	Man page Source code
load_spec_mort	Man page Source code
load_txt	Man page Source code
multisplit	Source code
plot_add_box	Man page Source code
plot_add_polygon_overview	Man page Source code
plot_add_range	Man page Source code
plot_bar	Man page Source code
plot_boxes	Man page Source code
plot_consumed_biomass	Man page Source code
plot_diet	Man page Source code
plot_diet_bec_dev	Man page Source code
plot_line	Man page Source code
plot_rec	Man page Source code
plot_sc_init	Man page Source code
plot_spatial_box	Man page Source code
plot_spatial_overlap	Man page Source code
plot_spatial_ts	Man page Source code
plot_species	Man page Source code
preprocess	Man page
preprocess_txt	Man page Source code
prm_to_df	Man page Source code
prm_to_df_ages	Man page Source code
ref_agemat	Man page
ref_bio_cons	Man page
ref_bio_sp	Man page
ref_dietmatrix	Man page
ref_dm	Man page
ref_eat	Man page
ref_grazing	Man page
ref_growth	Man page
ref_n	Man page
ref_nums	Man page
ref_physics	Man page
ref_resn	Man page
ref_structn	Man page
ref_to_bibkey	Man page Source code
ref_vol	Man page
ref_vol_dz	Man page
release_questions	Source code
remove_bboxes	Source code
remove_min_pools	Source code
sc_init	Man page Source code
scan_prm	Man page Source code
scan_reference_fishbase	Man page Source code
schoener	Source code
select_time	Source code
set_single_prm	Source code
split_dfs	Source code
split_species	Source code
str_split_twice	Man page Source code
theme_atlantis	Man page Source code
url_to_refid	Source code
write_diet	Man page Source code