Nothing
plot.bsims_transcript <-
function(x,
pch_nest, col_nest, cex_nest,
pch_vocal, col_vocal, cex_vocal,
lty_move, col_move, lwd_move,
lty_det_vocal, col_det_vocal, lwd_det_vocal,
lty_det_move, col_det_move, lwd_det_move,
show_tint=TRUE, show_rint=TRUE,
col_tint, col_rint,
...) {
.bsims_theme <- getOption("bsims_theme")
if (missing(pch_nest))
pch_nest <- .bsims_theme$pch_nest
if (missing(col_nest))
col_nest <- .bsims_theme$col_nest
if (missing(cex_nest))
cex_nest <- .bsims_theme$cex_nest
if (missing(pch_vocal))
pch_vocal <- .bsims_theme$pch_vocal
if (missing(col_vocal))
col_vocal <- .bsims_theme$col_vocal
if (missing(cex_vocal))
cex_vocal <- .bsims_theme$cex_vocal
if (missing(lty_move))
lty_move <- .bsims_theme$lty_move
if (missing(col_move))
col_move <- .bsims_theme$col_move
if (missing(lwd_move))
lwd_move <- .bsims_theme$lwd_move
if (missing(lty_det_vocal))
lty_det_vocal <- .bsims_theme$lty_det_vocal
if (missing(col_det_vocal))
col_det_vocal <- .bsims_theme$col_det_vocal
if (missing(lwd_det_vocal))
lwd_det_vocal <- .bsims_theme$lwd_det_vocal
if (missing(lty_det_move))
lty_det_move <- .bsims_theme$lty_det_move
if (missing(col_det_move))
col_det_move <- .bsims_theme$col_det_move
if (missing(lwd_det_move))
lwd_det_move <- .bsims_theme$lwd_det_move
if (missing(col_tint))
col_tint <- .bsims_theme$col_tint
if (missing(col_rint))
col_rint <- .bsims_theme$col_rint
op <- par(xpd = TRUE)
on.exit(par(op))
xx <- x
class(xx) <- c("bsim", "bsims_events")
plot(xx,
tlim=c(0, max(x$tint)),
event_type=x$event_type,
pch_nest=pch_nest, col_nest=col_nest, cex_nest=cex_nest,
pch_vocal=pch_vocal, col_vocal=col_vocal, cex_vocal=cex_vocal,
lty_move=lty_move, col_move=col_move, lwd_move=lwd_move, ...)
#lines(x, event_type=x$event_type, col=col_det, lwd=lwd_det)
if (!is.na(lty_det_vocal))
lines(x, event_type="vocal", tlim=c(0, max(x$tint)),
col=col_det_vocal, lty=lty_det_vocal, lwd=lwd_det_vocal)
if (!is.na(lty_det_move))
lines(x, event_type="move", tlim=c(0, max(x$tint)),
col=col_det_move, lty=lty_det_move, lwd=lwd_det_move)
if (show_rint) {
col_rint <- col2hex(col_rint)
rr <- x$rint
rr <- rr[is.finite(rr)]
if (any(is.infinite(x$rint))) {
polygon(0.5*x$extent*c(-1,-1,1,1), 0.5*x$extent*c(-1,1,1,-1),
border=NA, col=paste0(col_rint, "33"))
} else {
.draw_ellipse(0, 0, max(rr), max(rr),
border=NA, col=paste0(col_rint, "33"))
}
if (length(rr) > 0) {
.draw_ellipse(rep(0, length(rr)), rep(0, length(rr)), rr, rr,
border=col_rint)
}
}
if (show_tint) {
col_tint <- col2hex(col_tint)
tt <- x$tint
tt <- x$extent * x$tint / x$duration
tt <- c(0, tt) * 0.8 - (x$extent * 0.4)
if (max(x$tint) < x$duration)
polygon(x$extent*0.4*c(-1,-1,1,1), x$extent*c(0.4, 0.45, 0.45, 0.4),
border=col_tint, col=NA, lty=2)
polygon(x$extent*0.4*c(-1,-1,1,1), x$extent*c(0.4, 0.45, 0.45, 0.4),
border=col_tint, col=NA, lty=2)
for (i in 2:length(tt)) {
polygon(tt[c(i-1, i-1, i, i)],
x$extent*c(0.4, 0.45, 0.45, 0.4),
border=col_tint, col=paste0(col_tint, "33"), lty=1)
}
}
invisible(x)
}
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