bso_plot_stage_diagram: Plot a stage diagram (BSO only)

In barrks: Calculate Bark Beetle Phenology Using Different Models

Plot a stage diagram (BSO only)

Description

A stage diagram illustrates the share of individuals that are in a specific developmental stage of a particular generation over time.

Usage

bso_plot_stage_diagram(
  .pheno,
  .station = prop_stations(.pheno)[1],
  .stages = list("white", "brown"),
  .lty = c("dashed", "solid"),
  .lwd = 2,
  .colors = barrks_colors("bso_stages"),
  .labels = barrks_labels("bso_stages"),
  .legend_col = TRUE,
  .legend_lty = TRUE,
  ...
)

Arguments

.pheno	A BSO phenology (see bso_phenology())
.station	Pass a character vector to choose a station assigned to .pheno by its name, or pass a different station. See stations_create() for details.
.stages	List of stages to plot. Elements will be passed to bso_get_individuals_df(). Look there for more information.
.lty, .lwd	Vectors of line types or line widths that are used to plot the different stages. Should have the same length as .stages or 1.
.colors, .labels	Vectors of colors/labels starting from the hibernating generation followed consecutively by elements for the filial generations (not including sisterbroods).
.legend_col, .legend_lty	Manipulate the appearance of the legends for colors and line types. Pass TRUE/FALSE to enable/disable the respective legend. For the customization of the respective legend, a list of parameters for graphics::legend can be passed.
...	arguments passed to base::plot().

Value

None

Examples

# This may take a few minutes...

# calculate phenology
p <- bso_phenology('bso', barrks_data('stations'), .quiet = TRUE)

bso_plot_stage_diagram(p)

barrks documentation built on April 3, 2025, 9:47 p.m.