bdpopt: Optimisation of Bayesian Decision Problems
Version 1.0-1

Optimisation of the expected utility in single-stage and multi-stage Bayesian decision problems. The expected utility is estimated by simulation. For single-stage problems, JAGS is used to draw MCMC samples.

Browse man pages Browse package API and functions Browse package files

AuthorSebastian Jobjrnsson [aut, cre]
Date of publication2016-03-30 10:14:45
MaintainerSebastian Jobjrnsson <jobjorns@chalmers.se>
LicenseGPL-2
Version1.0-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("bdpopt")

Man pages

create_normal_model: Create Normal Emax Model
create_normal_model_from_file: Create Normal Emax Model From File
create_utility_function: Create Utility Function For The Normal Model
diag_mcmc_list: MCMC List For Diagnostic Evaluation
diag_mcmc_list_sim_model: MCMC List For Diagnostic Evaluation
eval_eu: Evaluate Expected Utility
eval_eu_sim_model: Evaluate Expected Utility
eval_on_grid: Evaluate Expected Utility On A Grid
eval_on_grid_sim_model: Evaluate Expected Utility On A Grid
fit_gpr: Fit A Gaussian Process Regression Function
fit_gpr_sim_model: Fit A Gaussian Process Regression Function
fit_loess: Fit A Local Polynomial Regression Function
fit_loess_sim_model: Fit A Local Polynomial Regression Function
n_opt: Optimise A Simple Normal Model
optimise_eu: Optimise Expected Utility
optimise_eu_sim_model: Optimise Expected Utility
optimise_sequential_eu: Optimise Sequential Expected Utility
optimise_sequential_normal_eu: Optimise A Sequential Normal Decision Problem
plot_sim_model: Plot The Results Contained In Simulation Model Object
print_sim_model: Print Status Of Simulation Model Object
sequential_dp: Construct A Sequential Decision Problem
sequential_normal_dp: Create A Sequential Normal Decision Problem
sim_model: Construct A Simulation Model Object

Functions

cart.prod Source code
cart.prod2 Source code
check.dp.structure Source code
cholesky.factorisation Source code
construct.named.arrays Source code
create.normal.model Man page Source code
create.normal.model.from.file Man page Source code
create.utility.function Man page Source code
diag.mcmc.list Man page Source code
diag.mcmc.list.sim.model Man page Source code
eval.eu Man page Source code
eval.eu.sim.model Man page Source code
eval.on.grid Man page Source code
eval.on.grid.sim.model Man page Source code
fit.gpr Man page Source code
fit.gpr.sim.model Man page Source code
fit.loess Man page Source code
fit.loess.sim.model Man page Source code
gpl.to.matrix Source code
gpr.given.hyperparams Source code
grid.spec.list.maxs Source code
grid.spec.list.mins Source code
grid.spec.list.seqs Source code
grid.spec.list.steps Source code
make.grid.list Source code
make.grid.point.list Source code
map.cols Source code
map.rows Source code
mat.cols Source code
mat.rows Source code
n.opt Man page Source code
named.dims.from.elements Source code
optimise.eu Man page Source code
optimise.eu.sim.model Man page Source code
optimise.sequential.eu Man page Source code
optimise.sequential.normal.eu Man page Source code
plot.sim.model Man page Source code
print.sim.model Man page Source code
sequential.dp Man page Source code
sequential.normal.dp Man page Source code
sim.model Man page Source code
squared.exp.cov Source code
squared.exp.cov.matrix Source code
squared.exp.lh.obj Source code
squared.exp.lh.obj.grad Source code
tr Source code

Files

inst
inst/extdata
inst/extdata/normal_model_jags_model.R
inst/extdata/normal_model_jags_data.R
inst/extdata/n_opt_jags_model.R
inst/doc
inst/doc/bdpopt_vignette.R
inst/doc/bdpopt_vignette.Rnw
inst/doc/bdpopt_vignette.pdf
NAMESPACE
R
R/utils.R
R/sequential_normal_dp.R
R/n_opt.R
R/normal_model.R
R/sequential.R
R/gpr.R
R/sim_model.R
R/grid.R
vignettes
vignettes/bdpopt_vignette.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/print_sim_model.Rd
man/fit_gpr.Rd
man/diag_mcmc_list_sim_model.Rd
man/create_normal_model_from_file.Rd
man/optimise_eu_sim_model.Rd
man/optimise_eu.Rd
man/sequential_normal_dp.Rd
man/eval_eu.Rd
man/eval_on_grid.Rd
man/fit_loess_sim_model.Rd
man/fit_gpr_sim_model.Rd
man/sequential_dp.Rd
man/optimise_sequential_eu.Rd
man/create_utility_function.Rd
man/n_opt.Rd
man/sim_model.Rd
man/fit_loess.Rd
man/eval_eu_sim_model.Rd
man/eval_on_grid_sim_model.Rd
man/optimise_sequential_normal_eu.Rd
man/plot_sim_model.Rd
man/diag_mcmc_list.Rd
man/create_normal_model.Rd
bdpopt documentation built on May 19, 2017, 10:18 p.m.