Files in beadplexr

Analysis of Multiplex Cytometric Bead Assays

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/turning_points.R R/cluster_events.R R/panel_information.R R/utils-operators.R R/raise_deprecated.R R/data.R R/read_fcs.R R/identify_analyte.R R/visualisations.R R/analyte_mfi.R R/calc_conc.R R/utils.R

inst/CITATION

inst/WORDLIST

inst/doc/preparing_flow_data.html

inst/doc/preparing_flow_data.Rmd inst/doc/legendplex_analysis.R inst/doc/cba_macsplex_example.Rmd

inst/doc/cba_macsplex_example.html

inst/doc/preparing_flow_data.R inst/doc/legendplex_analysis.Rmd

inst/doc/legendplex_analysis.html

inst/doc/cba_macsplex_example.R

inst/testdata/analyte_mfi.rds

inst/extdata/K2-C07-A7.fcs

inst/extdata/K2-C07-A7.rds

inst/resources/legendplex_mouse_free_active-total_tgf-b1_panel_mouse-rat_1-plex.yml

inst/resources/legendplex_human_cytokine_panel_2_13-plex.yml

inst/resources/legendplex_human_adipokine_panel_13-plex.yml

inst/resources/legendplex_mouse_inflammation_panel_13-plex.yml

inst/resources/legendplex_human_inflammation_panel_13-plex.yml

inst/resources/legendplex_mouse_hsc_panel_13-plex.yml

inst/resources/legendplex_human_t_helper_cytokine_panels_13-plex.yml

inst/resources/legendplex_human_proinflammatory_chemokine_panel_13-plex.yml

inst/resources/legendplex_human_cd8-nk_panel_13-plex.yml

inst/resources/legendplex_mouse_immunoglobulin_isotyping_panel_6-plex.yml

inst/resources/legendplex_mouse_anti-virus_response_panel_13-plex.yml

inst/resources/legendplex_mouse_t_helper_cytokine_panels_13-plex.yml

inst/resources/legendplex_mouse_ige_panel_1-plex.yml

inst/resources/legendplex_mouse_cytokine_panel_2_13-plex.yml

inst/resources/legendplex_human_anti-virus_response_panel_13-plex.yml

inst/resources/legendplex_human_growth_factor_panel_13-plex.yml

inst/resources/legendplex_human_metabolic_panel_1_4-plex.yml

inst/resources/legendplex_mouse_proinflammatory_chemokine_panel_13-plex.yml

build/vignette.rds

tests/testthat.R tests/spelling.R tests/testthat/test_turning_points.R tests/testthat/test_panel_information_file_structure.R tests/testthat/test_analyte_mfi.R tests/testthat/test_panel_information.R tests/testthat/test_identify_assay_analyte.R tests/testthat/test_read_fcs.R tests/testthat/test_cluster_manipulation.R tests/testthat/test_cluster_events.R tests/testthat/test_deprecation_warnings.R tests/testthat/test_visualisations.R tests/testthat/test_utils.R tests/testthat/test_identify_analyte.R tests/testthat/test_calc_conc.R tests/testthat/test_despeckle.R vignettes/preparing_flow_data.Rmd vignettes/cba_macsplex_example.Rmd vignettes/legendplex_analysis.Rmd

data/simplex.rda

data/lplex.rda

man/get_col_names_args.Rd man/as_data_frame_analyte.Rd man/dist_chebyshev.Rd man/density_cut.Rd man/calculate_concentration.Rd man/calc_dist_to_centre.Rd man/count_neighbours.Rd man/fit_standard_curve.Rd man/lplex.Rd man/ident_bead_pop.Rd man/load_panel.Rd man/geometric_mean.Rd man/raise_deprecated.Rd man/harmonic_mean.Rd man/simplex.Rd man/turning_point.Rd man/identify_assay_analyte.Rd man/nse-force.Rd man/panel_name_file.Rd man/pad_matrix.Rd man/calc_std_conc.Rd man/identify_analyte.Rd man/despeckle.Rd man/trim_population.Rd man/plot_concentrations.Rd man/facs_plot.Rd man/calc_analyte_mfi.Rd man/do_find_turning_points.Rd man/cluster_events.Rd man/assign_analyte_id.Rd man/read_fcs.Rd man/calc_centre.Rd man/approx_adjust.Rd

man/figures/logo.png

man/figures/beadplexr2.gpl

man/figures/beadplexr1.gpl

man/figures/logo.svg

beadplexr documentation built on July 9, 2023, 5:59 p.m.