TCPAprad: Protein expression data.

In beam: Fast Bayesian Inference in Large Gaussian Graphical Models

Description

Level 3 normalized proteomic data (v3.0) from The Cancer Proteome Alas (http://tcpaportal.org/tcpa). The data comprise the measurements of 189 antibodies obtained from 164 tumor tissue samples (prostate adenocarcinoma) using reverse phase protein arrays (RPPA).

Usage

TCPAprad

Format

A 164 by 189 matrix

Source

The Cancer Proteome Alas (http://tcpaportal.org/tcpa)

References

Li J, Lu Y, Akbani R, Ju Z, Roebuck PL, Liu W, Yang J-Y, Broom BM, Verhaak RGW, Kane DW, Wakefield C, Weinstein JN, Mills GB, Liang H. (2013). TCPA: A Resource for Cancer Functional Proteomics Data. Nature Methods 10(11), 1046-1047.

Examples

data(TCPAprad)
dim(TCPAprad)
TCPAprad[1:5, 1:5]

Example output

[1] 164 189
             X14.3.3_beta X14.3.3_epsilon X14.3.3_zeta     X4E.BP1 X4E.BP1_pS65
TCGA-G9-7510 -0.062469389      0.33868653   0.12006514 -0.18179484   -0.2483147
TCGA-G9-7521 -0.004920880      0.05303158   0.75887843 -0.49704576   -0.4536488
TCGA-G9-7522  0.001505181      0.15360962   0.18843760 -0.09632175   -0.3294391
TCGA-G9-7523 -0.000231358      0.15156614   0.09617488 -0.43003993   -0.3041560
TCGA-G9-7525  0.141236300     -0.10471443   0.47531363  0.99959931   -0.1059164

beam documentation built on July 1, 2020, 10:23 p.m.