Description Usage Arguments Slots Author(s)
An S4 class representing the output of the beam.select
function.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 | ## S4 method for signature 'beam.select'
print(x, ...)
## S4 method for signature 'beam.select'
show(object)
## S4 method for signature 'beam.select'
summary(object, ...)
## S4 method for signature 'beam.select'
marg(object)
## S4 method for signature 'beam.select'
cond(object)
## S4 method for signature 'beam.select'
mcor(object)
## S4 method for signature 'beam.select'
pcor(object)
## S4 method for signature 'beam.select'
plotML(object, ...)
## S4 method for signature 'beam.select'
plotAdj(object, type=object@type, order = "original")
## S4 method for signature 'beam.select'
bgraph(object)
## S4 method for signature 'beam.select'
ugraph(object)
|
x |
An object of class |
object |
An object of class |
type |
character. Type of correlation to be displayed (marginal, conditional or both) |
order |
character. Either 'original' or 'clust'. If 'clust' the rows and columns of the adjacency matrix are reordered using the cluster memberships obtained by the Louvain clustering algorithm. |
... |
further arguments passed to or from other methods. |
marginal
data.frame. A data.frame containing the marginal correlation estimates, Bayes factors and tail probabilities for the selected edges only.
conditional
data.frame. A data.frame containing the partial correlation estimates, Bayes factors and tail probabilities for the selected edges only.
dimX
numeric. Dimension of the imput data matrix X.
type
character. Input type (marginal, conditional or both)
varlabs
character. Column labels of X.
alphaOpt
numeric. Empirical Bayes estimates of hyperpaprameter alpha.
gridAlpha
matrix. A matrix containing the log-marginal likelihood of the Gaussian conjugate model as a function of a grid of values of alpha and delta.
valOpt
numeric. Maximum value of the log-marginal likelihood of the Gaussian conjugate model
method
character. Input method.
thres
numeric. Input threshold
Gwenael G.R. Leday and Ilaria Speranza
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