beastier-package | R Documentation |
beastier
: A package to call BEAST2.beastier
allows to call BEAST2, a popular
Bayesian phylogenetics tool, using
an R interface. 'beastier' closely follows the interface
of BEAST2, including its default settings.
Richèl J.C. Bilderbeek
These are packages associated with beastier
:
The package beautier
can create
BEAST2 input files from R
The package tracerer
can parse
BEAST2 output files from R
The package babette
combines the
functionality of beautier
,
beastier
and tracerer
into a single workflow
check_empty_beaustier_folders()
beast2_options <- create_beast2_options(
input_filename = get_beastier_path("2_4.xml")
)
if (is_beast2_installed() && beautier::is_on_ci()) {
run_beast2_from_options(beast2_options)
file.remove(beast2_options$output_state_filename)
remove_beaustier_folders()
}
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