create_beast2_validate_cmd: Creates the terminal command to validate a BEAST2 input file

In beastier: Call 'BEAST2'

Creates the terminal command to validate a BEAST2 input file

Description

Creates the terminal command to validate a BEAST2 input file

Usage

create_beast2_validate_cmd(
  input_filename,
  beast2_path = get_default_beast2_path()
)

Arguments

input_filename	the name of a BEAST2 input XML file. This file usually has an .xml extension. Use create_temp_input_filename to create a temporary filename with that extension.
beast2_path	name of either a BEAST2 binary file (usually simply beast) or a BEAST2 jar file (usually has a .jar extension). Use get_default_beast2_bin_path to get the default BEAST binary file's path Use get_default_beast2_jar_path to get the default BEAST jar file's path

Value

a character vector, of which the first element is the command (java, in this case), and the others are arguments (-jar, in this case, followed by more arguments.

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beaustier_folders()

if (is_beast2_installed() && beautier::is_on_ci()) {
  create_beast2_validate_cmd(
    input_filename = "input.xml"
  )
}

check_empty_beaustier_folders()

beastier documentation built on Oct. 6, 2024, 5:06 p.m.