Files in beastier
Call 'BEAST2'

MD5

NAMESPACE

DESCRIPTION

R/create_temp_state_filename.R R/save_lines.R R/get_default_beast2_path.R R/run_beast2_from_options.R R/print_beast2_options.R R/is_on_ci.R R/extract_tracelog_filename_from_beast2_input_file.R R/is_beast2_input_file.R R/check_empty_beastier_folder.R R/create_beast2_continue_cmd_from_options.R R/check_can_create_dir_for_state_output_file.R R/create_beast2_tracelog_folder.R R/add_quotes_if_has_spaces.R R/check_can_create_treelog_file.R R/get_trees_filenames.R R/save_nexus_as_fasta.R R/check_beast2_options.R R/get_paths.R R/create_beast2_validate_cmd.R R/get_java_version.R R/create_beast2_input_file_folder.R R/get_default_beast2_bin_path.R R/import-standalone-types-check.R R/create_beastier_tempfolder.R R/check_beast2_options_do_not_overwrite_existing_files.R R/run_beast2.R R/create_random_phylogeny.R R/extract_treelog_filename_from_beast2_input_file.R R/check_beast2_path.R R/is_jar_path.R R/remove_beastier_folder.R R/is_bin_path.R R/import-standalone-obj-type.R R/check_n_threads.R R/has_unique_ids.R R/do_minimal_run.R R/default_params_doc.R R/rename_beast2_options_filenames.R R/beast2_options_to_table.R R/is_beast2_installed.R R/get_default_beast2_version.R R/check_os.R R/create_random_alignment.R R/get_beastier_tempfilename.R R/create_beast2_state_output_file_folder.R R/get_default_beast2_folder.R R/remove_beaustier_folders.R R/check_can_create_state_output_file.R R/are_identical_alignments.R R/get_default_beast2_download_url.R R/check_true_false.R R/continue_beast2.R R/check_input_filename.R R/get_duplicate_param_ids.R R/check_beast2_optionses.R R/uninstall_beast2.R R/create_temp_input_filename.R R/install_beast2.R R/gives_beast2_warning.R R/create_beast2_treelog_folder.R R/beastier_report.R R/check_rng_seed.R R/get_path.R R/get_default_beast2_jar_path.R R/create_beast2_run_cmd.R R/create_beast2_screenlog_folder.R R/get_beast2_version.R R/get_alignment_ids.R R/extract_screenlog_filename_from_beast2_input_file.R R/get_beast2_example_filenames.R R/create_beast2_run_cmd_from_options.R R/create_beast2_version_cmd.R R/create_mcbette_beast2_options.R R/check_can_create_file.R R/is_alignment.R R/get_beast2_options_filenames.R R/remove_file_if_present.R R/get_beast2_main_class_name.R R/get_beast2_example_filename.R R/create_random_fasta.R R/check_can_create_screenlog_file.R R/create_beast2_options.R R/check_empty_beaustier_folders.R R/check_can_create_tracelog_file.R R/check_beast2.R R/are_beast2_input_lines.R R/get_beastier_folder.R R/upgrade_beast2.R R/get_default_java_path.R R/beastier-package.R

inst/CITATION

inst/WORDLIST

inst/doc/demo.Rmd inst/doc/demo.R

inst/doc/demo.html

inst/extdata/beast2_warning.xml

inst/extdata/beast2_example_output.log

inst/extdata/anthus_15_na.xml

inst/extdata/anthus_na_15.xml

inst/extdata/2_4.xml

inst/extdata/beast2_example_output.xml

inst/extdata/beast2_example_output.xml.state

inst/extdata/README.md

inst/extdata/anthus_15_15.xml

inst/extdata/anthus_15_26.xml

inst/extdata/anthus_15_15_long.xml

inst/extdata/beast2_error.xml

inst/extdata/anthus_na_na.xml

inst/extdata/nested_sampling.xml

inst/extdata/anthus_nd2.fas

inst/extdata/read_beast2_trees_example.trees

inst/extdata/beast2_example_output.trees

inst/extdata/test_output_2.fas

inst/extdata/anthus_aco.fas

inst/extdata/anthus_2_4.xml

build/vignette.rds

vignettes/demo.Rmd

vignettes/beastier_logo.png

man/figures/GitHubActions.png

man/figures/AppVeyor.png

man/figures/beastier_logo.png

man/figures/Codecov.png

beastier documentation built on Nov. 7, 2023, 5:08 p.m.

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Call 'BEAST2'

Files in beastier
Call 'BEAST2'

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beastier Call 'BEAST2'

Files in beastier Call 'BEAST2'

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beastier
Call 'BEAST2'

Files in beastier
Call 'BEAST2'