zdep: Assessing the differences between parameters of two...

In betapart: Partitioning Beta Diversity into Turnover and Nestedness Components

Assessing the differences between parameters of two distance-decay models computed with decay.model().

Description

Takes two distance-decay models fitted with decay.model() and assess via block-site bootstrap whether the parameters of both models are equal. Two tests are conducted independently, one for the equality of the first parameters of both models, another for the equality of the second parameters (slopes) of both models. The null hypothesis is that parameters of both models are equal.

Usage

zdep(m1, m2, resamples, st.val = c(1, 0))

Arguments

m1	first distance decay model, the output of decay.model().
m2	second distance decay model, the output of decay.model().
resamples	the number of bootstrap resamples.
st.val	starting values for the nonlinear model.

Value

The function returns a dataframe with the tests statistics (Z.dep) and respective p values for both model parameters.

Author(s)

Ramiro Martín-Devasa, Sara Martínez-Santalla, Carola Gómez-Rodríguez, Rosa M. Crujeiras, Andrés Baselga

References

Martín-Devasa R, Martínez-Santalla S, Gómez-Rodríguez C, Crujeiras RM, Baselga A. 2022. Comparing distance-decay parameters: a novel test under pairwise dependence. Ecological Informatics 72: 101894

Martínez-Santalla S, Martín-Devasa R, Gómez-Rodríguez C, Crujeiras RM, Baselga A. 2022. Assessing the non-linear decay of community similarity: permutation and site-block resampling significance tests. Journal of Biogeography 49: 968-978

See Also

decay.model, plot.decay, boot.coefs.decay

Examples

# presence/absence tables for longhorn beetles of South and North Europe
data(ceram.s)
data(ceram.n)

# spatial coordinates of territories in South and North Europe
data(coords.s)
data(coords.n)

# dissimilarity matrices
ceram.s.sim<-beta.pair(ceram.s)$beta.sim
ceram.n.sim<-beta.pair(ceram.n)$beta.sim

# spatial distances in km
distgeo.s<-dist(coords.s[,1:2])
distgeo.n<-dist(coords.n[,1:2])

# Negative exponential distance decay models
decay.south<-decay.model(y=1-ceram.s.sim, x=distgeo.s, y.type="sim", model.type="exp")
decay.north<-decay.model(y=1-ceram.n.sim, x=distgeo.n, y.type="sim", model.type="exp")

# Plot the decay models
plot.decay(decay.south, col="red")
plot.decay(decay.north, col="blue", add=TRUE)

# Assess North-South difference between intercepts and slopes
zdep(decay.south, decay.north, resamples=1000)

betapart documentation built on March 31, 2023, 10:29 p.m.