| .bifrost_assert_example_cache_file |
Source code
|
| .bifrost_assert_example_version |
Source code
|
| .bifrost_cached_example_artifact_is_valid |
Source code
|
| .bifrost_check_integer_scalar |
Source code
|
| .bifrost_check_tree_node |
Source code
|
| .bifrost_collect_print_data |
Source code
|
| .bifrost_download_example_file |
Source code
|
| .bifrost_example_artifact_cache_path |
Source code
|
| .bifrost_example_cache_dir |
Source code
|
| .bifrost_example_cache_file_is_symlink |
Source code
|
| .bifrost_example_entry |
Source code
|
| .bifrost_example_manifest_cache_path |
Source code
|
| .bifrost_example_remote_failure |
Source code
|
| .bifrost_example_sha256 |
Source code
|
| .bifrost_fmt_int |
Source code
|
| .bifrost_fmt_lgl |
Source code
|
| .bifrost_fmt_num |
Source code
|
| .bifrost_fmt_val |
Source code
|
| .bifrost_has |
Source code
|
| .bifrost_installed_version |
Source code
|
| .bifrost_is_package_version |
Source code
|
| .bifrost_is_safe_repository_path |
Source code
|
| .bifrost_is_scalar_string |
Source code
|
| .bifrost_kv |
Source code
|
| .bifrost_manifest_error |
Source code
|
| .bifrost_mvgls |
Source code
|
| .bifrost_mvgls_rate_historical |
Source code
|
| .bifrost_mvgls_regime_starts_historical |
Source code
|
| .bifrost_mvgls_start_backend |
Source code
|
| .bifrost_mvgls_start_grid_historical |
Source code
|
| .bifrost_mvgls_start_historical |
Source code
|
| .bifrost_pack_line |
Source code
|
| .bifrost_pick_tree |
Source code
|
| .bifrost_prepare_example_cache |
Source code
|
| .bifrost_print_header |
Source code
|
| .bifrost_print_history_plot |
Source code
|
| .bifrost_print_ic_block |
Source code
|
| .bifrost_print_mvgls_block |
Source code
|
| .bifrost_print_search_block |
Source code
|
| .bifrost_print_shift_nodes |
Source code
|
| .bifrost_print_warnings |
Source code
|
| .bifrost_print_weights |
Source code
|
| .bifrost_prune_example_cache |
Source code
|
| .bifrost_read_cached_example_manifests |
Source code
|
| .bifrost_read_example_manifest |
Source code
|
| .bifrost_resolve_cached_example |
Source code
|
| .bifrost_resolve_local_example |
Source code
|
| .bifrost_resolve_remote_example |
Source code
|
| .bifrost_run_future_lapply_safe |
Source code
|
| .bifrost_safe_regime_count |
Source code
|
| .bifrost_safe_tip_count |
Source code
|
| .bifrost_safe_trait_count |
Source code
|
| .bifrost_search_await_futures |
Source code
|
| .bifrost_search_await_work |
Source code
|
| .bifrost_search_calculate_ic_weights |
Source code
|
| .bifrost_search_cli_renderer |
Source code
|
| .bifrost_search_empty_ic_weights_df |
Source code
|
| .bifrost_search_fit_ic |
Source code
|
| .bifrost_search_fit_proposal |
Source code
|
| .bifrost_search_forward |
Source code
|
| .bifrost_search_future_lapply |
Source code
|
| .bifrost_search_heartbeat |
Source code
|
| .bifrost_search_history_dir |
Source code
|
| .bifrost_search_ic_value |
Source code
|
| .bifrost_search_ic_weights_row |
Source code
|
| .bifrost_search_initialize_tree |
Source code
|
| .bifrost_search_lapply |
Source code
|
| .bifrost_search_limit_worker_threads |
Source code
|
| .bifrost_search_load_history |
Source code
|
| .bifrost_search_model_fun |
Source code
|
| .bifrost_search_no_uncertainty_components |
Source code
|
| .bifrost_search_progress_session |
Source code
|
| .bifrost_search_report_skipped_stage |
Source code
|
| .bifrost_search_restore_rng |
Source code
|
| .bifrost_search_rng_seeds |
Source code
|
| .bifrost_search_rng_state |
Source code
|
| .bifrost_search_run_stage |
Source code
|
| .bifrost_search_save_history |
Source code
|
| .bifrost_search_score_candidates |
Source code
|
| .bifrost_search_validate_ic |
Source code
|
| .bifrost_search_warn_permissive_settings |
Source code
|
| .bifrost_search_with_future_plan |
Source code
|
| .bifrost_search_with_rng_seed |
Source code
|
| .bifrost_ui |
Source code
|
| .bifrost_validate_example_manifest |
Source code
|
| .bifrost_verify_example_file |
Source code
|
| .bifrost_wrap_nodes |
Source code
|
| .collapse_regime_phylogeny |
Source code
|
| .distribution_bootstrap_compute_kl |
Source code
|
| .distribution_bootstrap_density |
Source code
|
| .distribution_bootstrap_result |
Source code
|
| .distribution_check_count |
Source code
|
| .distribution_check_seed |
Source code
|
| .distribution_check_univariateML |
Source code
|
| .distribution_check_unused_dots |
Source code
|
| .distribution_empty_failures |
Source code
|
| .distribution_empty_parameters |
Source code
|
| .distribution_fit_models |
Source code
|
| .distribution_fit_parameter_estimates |
Source code
|
| .distribution_fit_parameter_rows |
Source code
|
| .distribution_fit_table |
Source code
|
| .distribution_goodness_table |
Source code
|
| .distribution_gumbel_kl |
Source code
|
| .distribution_gumbel_kl_value |
Source code
|
| .distribution_normalize_models |
Source code
|
| .distribution_parameter_table |
Source code
|
| .distribution_plot_check_rate_fit |
Source code
|
| .distribution_plot_xlab |
Source code
|
| .distribution_rate_fit_model |
Source code
|
| .distribution_round_numeric |
Source code
|
| .icTrajectory_apply_text_sizes |
Source code
|
| .icTrajectory_axis_limits |
Source code
|
| .icTrajectory_check_dots_empty |
Source code
|
| .icTrajectory_delta_limits |
Source code
|
| .icTrajectory_entry_accepted |
Source code
|
| .icTrajectory_entry_candidate_node |
Source code
|
| .icTrajectory_entry_delta |
Source code
|
| .icTrajectory_entry_error |
Source code
|
| .icTrajectory_entry_ic |
Source code
|
| .icTrajectory_entry_regime_id |
Source code
|
| .icTrajectory_entry_status |
Source code
|
| .icTrajectory_entry_step |
Source code
|
| .icTrajectory_fillable_pch |
Source code
|
| .icTrajectory_from_entries |
Source code
|
| .icTrajectory_from_search_like |
Source code
|
| .icTrajectory_group_numeric |
Source code
|
| .icTrajectory_history_matrix |
Source code
|
| .icTrajectory_legend_bty |
Source code
|
| .icTrajectory_legend_group |
Source code
|
| .icTrajectory_legend_inset |
Source code
|
| .icTrajectory_legend_label_vector |
Source code
|
| .icTrajectory_legend_labels |
Source code
|
| .icTrajectory_legend_labels_arg |
Source code
|
| .icTrajectory_legend_position |
Source code
|
| .icTrajectory_logical_scalar |
Source code
|
| .icTrajectory_logical_vector |
Source code
|
| .icTrajectory_matrix_entries |
Source code
|
| .icTrajectory_matrix_entry |
Source code
|
| .icTrajectory_named_group |
Source code
|
| .icTrajectory_nonnegative_scalar |
Source code
|
| .icTrajectory_numeric_vector |
Source code
|
| .icTrajectory_plot_delta_overlay |
Source code
|
| .icTrajectory_plot_delta_panel |
Source code
|
| .icTrajectory_plot_main_panel |
Source code
|
| .icTrajectory_plot_style |
Source code
|
| .icTrajectory_scalar_numeric |
Source code
|
| .icTrajectory_scalar_pch |
Source code
|
| .icTrajectory_show_delta_mode |
Source code
|
| .icTrajectory_status_cols |
Source code
|
| .icTrajectory_y_label |
Source code
|
| .lineage_rates_as_character |
Source code
|
| .lineage_rates_check_bmm |
Source code
|
| .lineage_rates_check_packages |
Source code
|
| .lineage_rates_generic_inputs |
Source code
|
| .lineage_rates_match_age_ref |
Source code
|
| .lineage_rates_metric_table |
Source code
|
| .lineage_rates_model_family |
Source code
|
| .lineage_rates_named_numeric |
Source code
|
| .lineage_rates_resolve_inputs |
Source code
|
| .lineage_rates_tip_lapply |
Source code
|
| .lineage_rates_validate_cores |
Source code
|
| .lineage_rates_validate_root_numbering |
Source code
|
| .plot_rate_map |
Source code
|
| .rateMap_add_category_legend |
Source code
|
| .rateMap_add_category_summaries |
Source code
|
| .rateMap_add_derived_uncertainty |
Source code
|
| .rateMap_build_color_map |
Source code
|
| .rateMap_build_result |
Source code
|
| .rateMap_category_labels |
Source code
|
| .rateMap_category_legend_breaks |
Source code
|
| .rateMap_category_legend_label_index |
Source code
|
| .rateMap_category_legend_x |
Source code
|
| .rateMap_category_lims |
Source code
|
| .rateMap_category_marker_values |
Source code
|
| .rateMap_category_sd |
Source code
|
| .rateMap_colors |
Source code
|
| .rateMap_compute_edge |
Source code
|
| .rateMap_compute_edges |
Source code
|
| .rateMap_compute_rate_flags |
Source code
|
| .rateMap_default_control_values |
Source code
|
| .rateMap_default_legend_length |
Source code
|
| .rateMap_disabled_rate_flags |
Source code
|
| .rateMap_edge_clade_keys |
Source code
|
| .rateMap_extract_ic |
Source code
|
| .rateMap_extract_param |
Source code
|
| .rateMap_extract_tree |
Source code
|
| .rateMap_fold_range |
Source code
|
| .rateMap_format_rate |
Source code
|
| .rateMap_has_special_categories |
Source code
|
| .rateMap_highest_density_interval |
Source code
|
| .rateMap_is_bifrost_search |
Source code
|
| .rateMap_is_single_fit |
Source code
|
| .rateMap_legend_digits |
Source code
|
| .rateMap_make_mapped_edge |
Source code
|
| .rateMap_map_value |
Source code
|
| .rateMap_mapped_states |
Source code
|
| .rateMap_match_edges |
Source code
|
| .rateMap_mcc_index |
Source code
|
| .rateMap_normalize_check |
Source code
|
| .rateMap_normalize_color_options |
Source code
|
| .rateMap_normalize_compute_options |
Source code
|
| .rateMap_normalize_control |
Source code
|
| .rateMap_normalize_grouped_options |
Source code
|
| .rateMap_normalize_options |
Source code
|
| .rateMap_normalize_rate_flags |
Source code
|
| .rateMap_normalize_summary_options |
Source code
|
| .rateMap_normalize_target_options |
Source code
|
| .rateMap_normalize_uncertainty_options |
Source code
|
| .rateMap_normalize_weights |
Source code
|
| .rateMap_order_state_names |
Source code
|
| .rateMap_prepare_inputs |
Source code
|
| .rateMap_quantile_names |
Source code
|
| .rateMap_rate_marker_to_value |
Source code
|
| .rateMap_recolor |
Source code
|
| .rateMap_require_packages |
Source code
|
| .rateMap_resolve_categories |
Source code
|
| .rateMap_resolve_weights |
Source code
|
| .rateMap_row_means |
Source code
|
| .rateMap_show_legend |
Source code
|
| .rateMap_stored_ncolors |
Source code
|
| .rateMap_subset_user_weights |
Source code
|
| .rateMap_summarize_category_values |
Source code
|
| .rateMap_summarize_run_values |
Source code
|
| .rateMap_tail_cluster_flags |
Source code
|
| .rateMap_target_tree |
Source code
|
| .rateMap_validate_dots |
Source code
|
| .rateMap_validate_fit |
Source code
|
| .rateMap_validate_n_categories |
Source code
|
| .rateMap_validate_ncolors |
Source code
|
| .rateMap_weighted_mean |
Source code
|
| .rateMap_weighted_quantile |
Source code
|
| .rateMap_weighted_sd |
Source code
|
| .rate_distribution_data |
Source code
|
| .rate_distribution_default_models |
Source code
|
| .rate_distribution_from_data_frame |
Source code
|
| .regime_align_matrix_traits |
Source code
|
| .regime_append_optional_summary_columns |
Source code
|
| .regime_bind_summary_runs |
Source code
|
| .regime_bootstrap_curve |
Source code
|
| .regime_check_unused_dots |
Source code
|
| .regime_complete_correlation |
Source code
|
| .regime_covariance_list_is_scalar_proportional |
Source code
|
| .regime_default_module_comparisons |
Source code
|
| .regime_extract_covariance |
Source code
|
| .regime_extract_covariance_list |
Source code
|
| .regime_extract_rates |
Source code
|
| .regime_filter_summary_min_tips |
Source code
|
| .regime_fisher_z |
Source code
|
| .regime_formula_with_data |
Source code
|
| .regime_heatmap_body_size |
Source code
|
| .regime_heatmap_orders |
Source code
|
| .regime_integration_model_summary |
Source code
|
| .regime_integration_plot_main |
Source code
|
| .regime_integration_plot_panel |
Source code
|
| .regime_match_optional |
Source code
|
| .regime_match_rates |
Source code
|
| .regime_match_run_argument |
Source code
|
| .regime_module_comparison_score |
Source code
|
| .regime_normalize_run_names |
Source code
|
| .regime_pca_component_indices |
Source code
|
| .regime_pca_loading_matrix |
Source code
|
| .regime_pca_loading_palette |
Source code
|
| .regime_pca_plot_loading_matrix |
Source code
|
| .regime_pca_plot_loadings_complex_heatmap |
Source code
|
| .regime_pretty_module_name |
Source code
|
| .regime_recycle_label |
Source code
|
| .regime_recycle_plot_selection |
Source code
|
| .regime_resolve_trait_labels |
Source code
|
| .regime_resolve_tree |
Source code
|
| .regime_should_use_complex_heatmap |
Source code
|
| .regime_standardize_summary_data |
Source code
|
| .regime_subtree_age |
Source code
|
| .regime_tip_states |
Source code
|
| .regime_tree_stats |
Source code
|
| .regime_upper_pair_names |
Source code
|
| .regime_validate_collapsed_tip_labels |
Source code
|
| .regime_validate_cores |
Source code
|
| .regime_validate_corr_threshold |
Source code
|
| .regime_validate_covariance_matrix |
Source code
|
| .regime_validate_identifiers |
Source code
|
| .regime_validate_logical |
Source code
|
| .regime_validate_min_tips |
Source code
|
| .regime_validate_module_comparisons |
Source code
|
| .regime_validate_module_plot_bootstrap |
Source code
|
| .regime_validate_module_plot_ci_level |
Source code
|
| .regime_validate_module_plot_seed |
Source code
|
| .regime_validate_modules |
Source code
|
| .regime_validate_relationship_values |
Source code
|
| .regime_validate_resid_sd_threshold |
Source code
|
| .regime_validate_run_list |
Source code
|
| .regime_validate_square_matrix |
Source code
|
| .regime_validate_trait_data |
Source code
|
| .regime_vector_to_symmetric_matrix |
Source code
|
| .regime_warn_if_search_vcvs |
Source code
|
| .shift_acceleration_waiting_times |
Source code
|
| .shift_check_logical |
Source code
|
| .shift_density_mode |
Source code
|
| .shift_empty_acceleration_pairs |
Source code
|
| .shift_empty_global_waiting |
Source code
|
| .shift_empty_lineage_waiting |
Source code
|
| .shift_empty_transitions |
Source code
|
| .shift_gap_summary |
Source code
|
| .shift_global_waiting_times |
Source code
|
| .shift_is_bifrost_output |
Source code
|
| .shift_lineage_waiting_times |
Source code
|
| .shift_magnitude_bind_transition_list |
Source code
|
| .shift_magnitude_bootstrap_p_values |
Source code
|
| .shift_magnitude_comparison_setting_mismatches |
Source code
|
| .shift_magnitude_count_rows |
Source code
|
| .shift_magnitude_distribution_draw |
Source code
|
| .shift_magnitude_distribution_prepare |
Source code
|
| .shift_magnitude_group_inputs |
Source code
|
| .shift_magnitude_is_group_container |
Source code
|
| .shift_magnitude_is_input_list |
Source code
|
| .shift_magnitude_modal |
Source code
|
| .shift_magnitude_normalize_tests |
Source code
|
| .shift_magnitude_plot_check_alpha |
Source code
|
| .shift_magnitude_plot_check_density_args |
Source code
|
| .shift_magnitude_plot_colors |
Source code
|
| .shift_magnitude_plot_count_annotation |
Source code
|
| .shift_magnitude_plot_count_row |
Source code
|
| .shift_magnitude_plot_count_row_from_comparison |
Source code
|
| .shift_magnitude_plot_count_row_from_counts |
Source code
|
| .shift_magnitude_plot_count_tests |
Source code
|
| .shift_magnitude_plot_count_values |
Source code
|
| .shift_magnitude_plot_count_ylim |
Source code
|
| .shift_magnitude_plot_density |
Source code
|
| .shift_magnitude_plot_density_annotation |
Source code
|
| .shift_magnitude_plot_density_label |
Source code
|
| .shift_magnitude_plot_density_legend |
Source code
|
| .shift_magnitude_plot_density_pair |
Source code
|
| .shift_magnitude_plot_density_xlim |
Source code
|
| .shift_magnitude_plot_density_ylim |
Source code
|
| .shift_magnitude_plot_draw_density |
Source code
|
| .shift_magnitude_plot_mode_lines |
Source code
|
| .shift_magnitude_plot_offsets |
Source code
|
| .shift_magnitude_plot_p_value |
Source code
|
| .shift_magnitude_plot_single_title |
Source code
|
| .shift_magnitude_plot_statistic |
Source code
|
| .shift_magnitude_plot_xlab |
Source code
|
| .shift_magnitude_resolve_rep_alias |
Source code
|
| .shift_magnitude_resolve_transitions |
Source code
|
| .shift_magnitude_run_test |
Source code
|
| .shift_magnitude_summary |
Source code
|
| .shift_magnitude_test_row |
Source code
|
| .shift_magnitude_tests |
Source code
|
| .shift_magnitude_validate_bootstrap |
Source code
|
| .shift_magnitude_validate_ks |
Source code
|
| .shift_magnitude_values |
Source code
|
| .shift_node_heights |
Source code
|
| .shift_node_marks_as_prepared |
Source code
|
| .shift_node_marks_check_number |
Source code
|
| .shift_node_marks_draw |
Source code
|
| .shift_node_marks_is_prepared |
Source code
|
| .shift_node_marks_letter_rows |
Source code
|
| .shift_node_marks_letters |
Source code
|
| .shift_node_marks_merge_weights |
Source code
|
| .shift_node_marks_prepare |
Source code
|
| .shift_node_marks_resolve |
Source code
|
| .shift_node_marks_transition_table |
Source code
|
| .shift_rate_change |
Source code
|
| .shift_resolve_inputs |
Source code
|
| .shift_root_node |
Source code
|
| .shift_state_at_node |
Source code
|
| .shift_validate_node_painted_tree |
Source code
|
| .shift_waiting_category |
Source code
|
| .shift_waiting_resolve_transitions |
Source code
|
| .shift_waiting_summary |
Source code
|
| .simulation_check_generator |
Source code
|
| .simulation_check_integer_scalar |
Source code
|
| .simulation_check_integer_vector |
Source code
|
| .simulation_check_unused_dots |
Source code
|
| .simulation_covariance_diagnostics |
Source code
|
| .simulation_draw_covariance |
Source code
|
| .simulation_generator_from_options |
Source code
|
| .simulation_replicate_seeds |
Source code
|
| .simulation_restore_seed |
Source code
|
| .simulation_seed_runner |
Source code
|
| .simulation_set_seed |
Source code
|
| .simulation_study_compact_call |
Source code
|
| .simulation_study_search |
Source code
|
| .simulation_study_simulate_null |
Source code
|
| .simulation_study_simulate_shifted |
Source code
|
| .simulation_template_fit_settings |
Source code
|
| .simulation_transform_integration |
Source code
|
| .simulation_tuning_study_seeds |
Source code
|
| .simulation_validate_covariance |
Source code
|
| .waiting_time_data |
Source code
|
| .waiting_time_drop_root_wait |
Source code
|
| .waiting_time_exp_lambda |
Source code
|
| .waiting_time_fit_by_lineage |
Source code
|
| .waiting_time_hdi |
Source code
|
| .waiting_time_lambda_summary |
Source code
|
| .waiting_time_lineage_column |
Source code
|
| .waiting_time_lineage_parameters |
Source code
|
| .waiting_time_validate_values |
Source code
|
| .waiting_time_value_column |
Source code
|
| addShiftToModel |
Source code
|
| as.data.frame.bifrost_search_tuning_grid |
Man page
Source code
|
| as.data.frame.bifrost_search_tuning_selection |
Man page
Source code
|
| as.data.frame.bifrost_shift_recovery_evaluation |
Man page
Source code
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| as.data.frame.bifrost_simulation_study |
Man page
Source code
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| as.data.frame.rate_distribution_fit |
Man page
Source code
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| as.data.frame.regime_correlation_pca |
Man page
Source code
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| as.data.frame.regime_integration_relationships |
Man page
Source code
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| as.data.frame.regime_module_diagnostics |
Man page
Source code
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| as.data.frame.shift_magnitude_comparison |
Man page
Source code
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| as.data.frame.shift_magnitude_comparison_set |
Man page
Source code
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| as.data.frame.shift_magnitude_count_set |
Man page
Source code
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| as.data.frame.shift_magnitude_counts |
Man page
Source code
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| as.data.frame.shift_node_marks |
Man page
Source code
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| as.data.frame.waiting_time_distribution_fit |
Man page
Source code
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| bifrost_example_file |
Man page
Source code
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| bootstrap_rate_distribution |
Man page
Source code
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| collectLegacyTraitDataColumns |
Source code
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| compare_shift_magnitudes |
Man page
Source code
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| containsSimulationDot |
Source code
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| createSimulationTemplate |
Man page
Source code
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| distribution-fit-data-frames |
Man page
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| evaluateShiftRecovery |
Man page
Source code
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| extractNamedResponseNames |
Source code
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| extractRegimeVCVs |
Source code
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| fisher_z_transform |
Man page
Source code
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| fitMvglsAndExtractBIC |
Source code
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| fitMvglsAndExtractBIC.formula |
Source code
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| fitMvglsAndExtractGIC |
Source code
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| fitMvglsAndExtractGIC.formula |
Source code
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| fit_rate_distribution |
Man page
Source code
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| fit_regime_covariance_runs |
Man page
Source code
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| fit_regime_covariances |
Man page
Source code
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| fit_waiting_time_distribution |
Man page
Source code
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| generatePaintedTrees |
Source code
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| generateViridisColorScale |
Man page
Source code
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| getDescendants |
Source code
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| icTrajectory |
Man page
Source code
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| icTrajectory.bifrost_search |
Source code
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| icTrajectory.default |
Source code
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| icTrajectory.list |
Source code
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| isLegacyTraitDataReference |
Source code
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| isLegacyTraitDataSubset |
Source code
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| isSimulationInterceptOnly |
Source code
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| isSupportedNamedResponse |
Source code
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| lineage_rates |
Man page
Source code
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| normalizeMvglsFormulaCall |
Source code
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| normalizeSimulationFormulaSpec |
Source code
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| paintSubTree_mod |
Source code
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| paintSubTree_removeShift |
Source code
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| plot.icTrajectory |
Man page
Source code
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| plot.rateMap |
Man page
Source code
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| plot.rate_distribution_fit |
Man page
Source code
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| plot.regime_correlation_pca |
Man page
Source code
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| plot.regime_integration_relationships |
Man page
Source code
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| plot.regime_module_diagnostics |
Man page
Source code
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| plot.shift_magnitude_comparison |
Man page
Source code
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| plot.shift_magnitude_comparison_set |
Man page
Source code
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| plot.shift_magnitude_count_set |
Man page
Source code
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| plot.shift_magnitude_counts |
Man page
Source code
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| plot.shift_node_marks |
Man page
Source code
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| predictorSchemaForData |
Source code
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| print.bifrost_search |
Man page
Source code
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| print.bifrost_search_tuning_grid |
Man page
Source code
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| print.bifrost_search_tuning_selection |
Man page
Source code
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| print.bifrost_shift_recovery_evaluation |
Man page
Source code
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| print.bifrost_simulation_study |
Man page
Source code
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| print.bifrost_simulation_template |
Man page
Source code
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| print.rateMap |
Man page
Source code
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| rateMap |
Man page
Source code
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| rateMapControl |
Man page
Source code
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| rateMapRateFlags |
Man page
Source code
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| rateMapView |
Man page
Source code
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| regime_correlation_pca |
Man page
Source code
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| regime_integration_pgls |
Man page
Source code
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| regime_integration_relationships |
Man page
Source code
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| regime_module_diagnostics |
Man page
Source code
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| removeShiftFromTree |
Source code
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| resolveLegacyTraitDataColumns |
Source code
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| resolveSimulationColumns |
Source code
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| rewriteLegacyTraitDataExpr |
Source code
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| runFalsePositiveSimulationStudy |
Man page
Source code
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| runSearchTuningGrid |
Man page
Source code
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| runShiftRecoverySimulationStudy |
Man page
Source code
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| searchOptimalConfiguration |
Man page
Source code
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| selectTunedSearchParameters |
Man page
Source code
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| shift_magnitude_counts |
Man page
Source code
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| shift_magnitude_groups |
Man page
Source code
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| shift_node_marks |
Man page
Source code
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| shift_transitions |
Man page
Source code
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| shift_waiting_times |
Man page
Source code
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| simulateNullDataset |
Man page
Source code
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| simulateShiftedDataset |
Man page
Source code
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| simulationFormulaToObject |
Source code
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| simulationFormulaToString |
Source code
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| summarize_regime_covariance_runs |
Man page
Source code
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| summarize_regime_covariances |
Man page
Source code
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| validateSimulationIdentifiers |
Source code
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| validateSimulationStudyFormula |
Source code
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| whichShifts |
Source code
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