plot.regime_integration_relationships: Plot Regime Rate-Integration Relationships

In bifrost: Branch-Level Inference Framework for Recognizing Optimal Shifts in Traits

Plot Regime Rate-Integration Relationships

Description

Draw Supplementary Figure 4A-style panels from regime_integration_relationships().

Usage

## S3 method for class 'regime_integration_relationships'
plot(
  x,
  panel = c("both", "variance", "correlation"),
  main = NULL,
  xlab = NULL,
  ylab = "Log inferred regime rate",
  point_alpha = 0.45,
  variance_col = "#4C78A8",
  correlation_col = "#D55E00",
  variance_line_col = "#1B4F72",
  correlation_line_col = "#8A3A00",
  ribbon_col = "grey70",
  pch = 21,
  lwd = 2,
  ...
)

Arguments

x	A regime_integration_relationships object.
panel	Which panel to draw: "both", "variance", or "correlation".
main	Optional panel title. For panel = "both", supply a length-two vector to title the variance and correlation panels separately.
xlab, ylab	Optional axis labels.
point_alpha	Point fill transparency.
variance_col, correlation_col	Point fill colors for the two panels.
variance_line_col, correlation_line_col	Curve colors for the two panels.
ribbon_col	Ribbon color.
pch, lwd	Base plotting symbol and line width.
...	Additional graphical parameters passed to graphics::plot().

Value

Invisibly returns x.

bifrost documentation built on Nov. 5, 2026, 9:07 a.m.