Files in bifrost
Branch-Level Inference Framework for Recognizing Optimal Shifts in Traits
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/bifrost_search-methods.R
R/plot_ic_acceptance_matrix.R
R/plotting-utils.R
R/searchOptimalConfiguration.R
R/utils.R
inst/CITATION
inst/WORDLIST
inst/doc/jaw-shape-vignette.R
inst/doc/jaw-shape-vignette.Rmd
inst/doc/quick-start-vignette.html
inst/doc/quick-start-vignette.R
inst/doc/quick-start-vignette.Rmd
inst/doc/jaw-shape-vignette.html
inst/extdata/jaw-shape/jaws_coords.RDS
inst/extdata/jaw-shape/mrbayes_prune_tree.RDS
build/vignette.rds
tests/testthat.R
tests/spelling.R
tests/testthat/test-fitMvglsAndExtractBIC.formula.R
tests/testthat/test-removeShiftFromTree.R
tests/testthat/test-plot_ic_acceptance_matrix.R
tests/testthat/test-generatePaintedTrees.R
tests/testthat/test-addShiftToModel_alt.R
tests/testthat/test-getDescendants.R
tests/testthat/test-paintSubTree_removeShift.R
tests/testthat/test-generateViridisColorScale.R
tests/testthat/test-whichShifts.R
tests/testthat/test-print-bifrost_search.R
tests/testthat/test-addShiftToModel.R
tests/testthat/test-extractRegimeVCVs.R
tests/testthat/test-fitMvglsAndExtractGIC.formula.r
tests/testthat/test-searchOptimalConfiguration.R
tests/testthat/test-paintSubTree_mod.R
tests/testthat/test-mvgls-functions.R
tests/testthat/fixtures/simdata.RDS
vignettes/jaw-shape-vignette.Rmd
vignettes/quick-start-vignette.Rmd
vignettes/jaw-shape/IC_decay.png
vignettes/jaw-shape/cor_heatmap.png
vignettes/jaw-shape/Gogosardina_coatesi_jaw_customcrop.png
vignettes/jaw-shape/gr1_lrg_png24.png
vignettes/jaw-shape/gr1_lrg.jpg
vignettes/jaw-shape/branch_rates.png
vignettes/quick-start/bifrost-workflow.svg
man/plot_ic_acceptance_matrix.Rd
man/print.bifrost_search.Rd
man/generateViridisColorScale.Rd
man/searchOptimalConfiguration.Rd
man/figures/logo.png
