Description Usage Arguments Value Author(s) Examples
call genotype from AD
1 2 | callGtFromAd(x, min.depth = 10, max.depth = 200, low = 0.2,
high = 0.8)
|
x |
AD matrix |
min.depth |
minimum depth to infer the genotype, if depth lower than it, it will be conside as NA |
max.depth |
maximum depth to infer the genotype, if depth larger than it, it will be conside as NA |
low |
threshold to infer one parent, encoded as 0 |
high |
threshold to infer another parent, encoded as 2 |
matrix contains. The allele depth will convet to genotype
Zhougeng Xu
1 2 3 4 |
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