binParameters: binParameters

In binneR: Spectral Processing for High Resolution Flow Infusion Mass Spectrometry

Description

selection of parameters to use for spectral binning.

Usage

binParameters(scans = 5:12, modes = c("n", "p"), sranges = list(c(70,
  1000)), cls = character(), nCores = detectCores(),
  clusterType = "FORK")

Arguments

scans	numeric vector containing the scan indexes to use for binning
modes	character vector denoting the order and names of the modes
sranges	list of vectors containing the ranges of the scan events present
cls	the column of class labels to use for aggregating accurate mass data. Defaults to NULL where accurate mass data will be averaged accross all samples
nCores	the number of cores to use for parallel processing
clusterType	the type of cluster to use for parallel processing

Examples

p <- binParameters(scans = 6:17,nCores = 2,clusterType = 'PSOCK')

## Example using multiple overlapping scan ranges
p <- binParameters(scans = 6:17,sranges = list(c(55,280),c(270,1200)))

binneR documentation built on May 1, 2019, 6:34 p.m.