binomen: 'Taxonomic' Specification and Parsing Methods
Version 0.1.2

Includes functions for working with taxonomic data, including functions for combining, separating, and filtering taxonomic groups by any rank or name. Allows standard ('SE') and non-standard evaluation ('NSE').

AuthorScott Chamberlain [aut, cre]
Date of publication2017-04-25 22:11:47 UTC
MaintainerScott Chamberlain <myrmecocystus@gmail.com>
LicenseMIT + file LICENSE
Version0.1.2
URL https://github.com/ropensci/binomen
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("binomen")

Getting started

Package overview
README.md

Popular man pages

binomen-package: Taxonomic class specification and parsing methods
binomial: A class to represent a taxonomic binomial
parts: Pick out parts by name
pipe: Pipe operator
strain: Parse taxon or taxondf objects by a range of names
taxa: A class to represent a list of taxa
taxon_classes: Taxonomic class methods
See all...

All man pages Function index File listing

Man pages

binomen-package: Taxonomic class specification and parsing methods
binomial: A class to represent a taxonomic binomial
gethier: Get hierarchy as a data.frame
grouping: A class to represent a taxonomic classification
make_taxon: Make taxon from class
make_taxon_fromclass: Make taxon from class
parts: Pick out parts by name
pick: Pick names
pipe: Pipe operator
pop: Pop names out
rank_table: Lookup-table for IDs of taxonomic ranks
scatter: Scatter each taxon in a taxondf to a taxon object
span: Parse taxon or taxondf objects by a range of names
strain: Parse taxon or taxondf objects by a range of names
taxa: A class to represent a list of taxa
taxon: A class to represent a single taxon
taxon_classes: Taxonomic class methods
taxon_df: Taxon data.frame
taxonref: A class to represent a taxonomic reference
taxonrefs: A class to represent a list of taxonomic references

Functions

\%>\% Man page
assemble Man page Source code
assemble.taxa Man page Source code
binomen Man page
binomen-package Man page
binomial Man page Source code
check_one_type Source code
check_type Source code
check_vars Source code
class2clazz Source code
dots Source code
fill_nums Source code
gethier Man page Source code
gethier.grouping Source code
gethier.taxon Source code
grouping Man page Source code
make_df Source code
make_taxon Man page Source code
make_taxon_fromclass Man page Source code
make_vars Source code
na_me Source code
name Man page Source code
name.taxon Man page Source code
name.taxonref Man page Source code
parts Man page
pick Man page Source code
pick.taxa Source code
pick.taxon Source code
pick.taxondf Source code
pluck Source code
pop Man page Source code
pop.taxa Source code
pop.taxon Source code
pop.taxondf Source code
print.binomial Source code
print.grouping Source code
print.taxon Source code
print.taxonref Source code
rank Man page Source code
rank.taxon Man page Source code
rank.taxonref Man page Source code
rank_table Man page
rankid_get Source code
ranks_poss Source code
scatter Man page Source code
scatter.taxondf Source code
span Man page Source code
span.taxa Source code
span.taxon Source code
span.taxondf Source code
splitem Source code
strain Man page Source code
strain.taxon Source code
strain_parse Source code
taxa Man page Source code
taxon Man page Source code
taxon_classes Man page
taxon_df Man page Source code
taxonid Man page Source code
taxonid.taxon Man page Source code
taxonid.taxonref Man page Source code
taxonparse Source code
taxonref Man page Source code
taxonrefs Man page Source code
tc Source code
uri Man page Source code
uri.taxon Man page Source code
uri.taxonref Man page Source code
va_rs Source code
va_rs_ Source code
vars Source code

Files

inst
inst/ignore
inst/ignore/sort.R
inst/ignore/methods.R
inst/ignore/test-sort.R
inst/ignore/tojson.R
inst/ignore/playing.R
inst/doc
inst/doc/binomen_vignette.Rmd
inst/doc/binomen_vignette.R
inst/doc/binomen_vignette.html
tests
tests/testthat
tests/testthat/test-gethier.R
tests/testthat/test-taxon.R
tests/testthat/test-span.R
tests/testthat/test-pick.R
tests/testthat/test-strain.R
tests/testthat/test-scatter_assemble.R
tests/testthat/test-make_taxon_fromclass.R
tests/testthat/test-binomial.R
tests/testthat/test-taxonrefs.R
tests/testthat/test-parts.R
tests/testthat/test-pop.R
tests/testthat/test-grouping.R
tests/testthat/test-taxonref.R
tests/test-all.R
NAMESPACE
NEWS.md
data
data/rank_table.rda
R
R/strain.R
R/globals.R
R/s3methods.R
R/parts.R
R/pop.R
R/make_taxon_fromclass.R
R/taxon_df.R
R/pick.R
R/scatter.R
R/binomen-package.R
R/span.R
R/gethier.R
R/make_taxon.R
R/zzz.R
vignettes
vignettes/binomen_vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/pop.Rd
man/pipe.Rd
man/grouping.Rd
man/parts.Rd
man/binomen-package.Rd
man/span.Rd
man/rank_table.Rd
man/strain.Rd
man/taxon_classes.Rd
man/taxon_df.Rd
man/make_taxon_fromclass.Rd
man/taxa.Rd
man/scatter.Rd
man/taxonref.Rd
man/taxonrefs.Rd
man/taxon.Rd
man/gethier.Rd
man/pick.Rd
man/binomial.Rd
man/make_taxon.Rd
LICENSE
binomen documentation built on May 20, 2017, 5:29 a.m.

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