binomen: 'Taxonomic' Specification and Parsing Methods

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Includes functions for working with taxonomic data, including functions for combining, separating, and filtering taxonomic groups by any rank or name. Allows standard (SE) and non-standard evaluation (NSE).

Author
Scott Chamberlain [aut, cre]
Date of publication
2015-12-07 22:17:54
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.1.0
URLs

View on CRAN

Man pages

binomen-package
Taxonomic class specification and parsing methods
binomial
A class to represent a taxonomic binomial
gethier
Get hierarchy as a data.frame
grouping
A class to represent a taxonomic classification
make_taxon
Make taxon from class
make_taxon_fromclass
Make taxon from class
parts
Pick out parts by name
pick
Pick names
pipe
Pipe operator
pop
Pop names out
rank_table
Lookup-table for IDs of taxonomic ranks
scatter
Scatter each taxon in a taxondf to a taxon object
span
Parse taxon or taxondf objects by a range of names
strain
Parse taxon or taxondf objects by a range of names
taxa
A class to represent a list of taxa
taxon
A class to represent a single taxon
taxon_classes
Taxonomic class methods
taxon_df
Taxon data.frame
taxonref
A class to represent a taxonomic reference
taxonrefs
A class to represent a list of taxonomic references

Files in this package

binomen
binomen/inst
binomen/inst/ignore
binomen/inst/ignore/sort.R
binomen/inst/ignore/methods.R
binomen/inst/ignore/test-sort.R
binomen/inst/ignore/tojson.R
binomen/inst/ignore/playing.R
binomen/inst/doc
binomen/inst/doc/binomen_vignette.Rmd
binomen/inst/doc/binomen_vignette.R
binomen/inst/doc/binomen_vignette.html
binomen/tests
binomen/tests/testthat
binomen/tests/testthat/test-gethier.R
binomen/tests/testthat/test-taxon.R
binomen/tests/testthat/test-span.R
binomen/tests/testthat/test-pick.R
binomen/tests/testthat/test-strain.R
binomen/tests/testthat/test-scatter_assemble.R
binomen/tests/testthat/test-make_taxon_fromclass.R
binomen/tests/testthat/test-binomial.R
binomen/tests/testthat/test-taxonrefs.R
binomen/tests/testthat/test-parts.R
binomen/tests/testthat/test-pop.R
binomen/tests/testthat/test-grouping.R
binomen/tests/testthat/test-taxonref.R
binomen/tests/test-all.R
binomen/NAMESPACE
binomen/data
binomen/data/rank_table.rda
binomen/R
binomen/R/strain.R
binomen/R/globals.R
binomen/R/s3methods.R
binomen/R/parts.R
binomen/R/pop.R
binomen/R/make_taxon_fromclass.R
binomen/R/taxon_df.R
binomen/R/pick.R
binomen/R/scatter.R
binomen/R/binomen-package.R
binomen/R/span.R
binomen/R/gethier.R
binomen/R/make_taxon.R
binomen/R/zzz.R
binomen/vignettes
binomen/vignettes/binomen_vignette.Rmd
binomen/README.md
binomen/MD5
binomen/build
binomen/build/vignette.rds
binomen/DESCRIPTION
binomen/man
binomen/man/pop.Rd
binomen/man/pipe.Rd
binomen/man/grouping.Rd
binomen/man/parts.Rd
binomen/man/binomen-package.Rd
binomen/man/span.Rd
binomen/man/rank_table.Rd
binomen/man/strain.Rd
binomen/man/taxon_classes.Rd
binomen/man/taxon_df.Rd
binomen/man/make_taxon_fromclass.Rd
binomen/man/taxa.Rd
binomen/man/scatter.Rd
binomen/man/taxonref.Rd
binomen/man/taxonrefs.Rd
binomen/man/taxon.Rd
binomen/man/gethier.Rd
binomen/man/pick.Rd
binomen/man/binomial.Rd
binomen/man/make_taxon.Rd
binomen/LICENSE