bioimagetools: Some Tools for Imaging

Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analysing 3D point patterns.

AuthorVolker Schmid [aut, cre], Priyanka Kukreja [ctb], Fabian Scheipl [ctb]
Date of publication2016-12-01 11:28:44
MaintainerVolker Schmid <stats@volkerschmid.de>
LicenseGPL-3
Version1.0.0
http://bioimaginggroup.github.io/bioimagetools

View on CRAN

Files in this package

bioimagetools
bioimagetools/inst
bioimagetools/inst/extdata
bioimagetools/inst/extdata/cell.csv
bioimagetools/inst/extdata/V.bmp
bioimagetools/inst/extdata/amask.tif
bioimagetools/inst/extdata/kreispunkte.table
bioimagetools/inst/extdata/kringel.tif
bioimagetools/inst/doc
bioimagetools/inst/doc/bioimagetools.html
bioimagetools/inst/doc/bioimagetools.R
bioimagetools/inst/doc/bioimagetools.Rmd
bioimagetools/src
bioimagetools/src/Makevars
bioimagetools/src/getid.c
bioimagetools/src/segment.c
bioimagetools/src/filter.c
bioimagetools/src/Makevars.win
bioimagetools/src/nearestClassDistances.c
bioimagetools/NAMESPACE
bioimagetools/NEWS
bioimagetools/R
bioimagetools/R/bwlabel3d.R bioimagetools/R/cmoments3d.R bioimagetools/R/readClassTIF.R bioimagetools/R/spots.R bioimagetools/R/writetif.R bioimagetools/R/cNNTest.R bioimagetools/R/Kcross3D.R bioimagetools/R/segment.R bioimagetools/R/readbmp.R bioimagetools/R/status.R bioimagetools/R/readtif.R bioimagetools/R/folder_choose.R bioimagetools/R/intensity3d.R bioimagetools/R/nearestneighbours.R bioimagetools/R/standardize.R bioimagetools/R/mexican_hat_brush.R bioimagetools/R/image.R bioimagetools/R/nearestclassdistances.R bioimagetools/R/crossNN.R bioimagetools/R/onattach.R bioimagetools/R/nearestneighbourdistribution.R bioimagetools/R/testColoc.R bioimagetools/R/tablen.R bioimagetools/R/plot_nearest_class_distances.R bioimagetools/R/filterImage3d.R bioimagetools/R/outside.R bioimagetools/R/L3cross3d.R bioimagetools/R/distance2border.R bioimagetools/R/segmentoutside.R
bioimagetools/vignettes
bioimagetools/vignettes/bioimagetools.Rmd
bioimagetools/README.md
bioimagetools/MD5
bioimagetools/build
bioimagetools/build/vignette.rds
bioimagetools/DESCRIPTION
bioimagetools/man
bioimagetools/man/intensity3D.Rd bioimagetools/man/mexican.hat.brush.Rd bioimagetools/man/segment.Rd bioimagetools/man/writeTIF.Rd bioimagetools/man/filterImage3d.Rd bioimagetools/man/crossNN.Rd bioimagetools/man/folder.choose.Rd bioimagetools/man/readTIF.Rd bioimagetools/man/readClassTIF.Rd bioimagetools/man/bwlabel3d.Rd bioimagetools/man/K.cross.3D.Rd bioimagetools/man/spots.Rd bioimagetools/man/L.cross.3D.Rd bioimagetools/man/outside.Rd bioimagetools/man/img.Rd bioimagetools/man/segment.outside.Rd bioimagetools/man/nearestClassDistance.Rd bioimagetools/man/nearest.neighbour.distribution.Rd bioimagetools/man/testColoc.Rd bioimagetools/man/cnnTest.Rd bioimagetools/man/distance2border.Rd bioimagetools/man/table.n.Rd bioimagetools/man/cmoments3d.Rd bioimagetools/man/readBMP.Rd bioimagetools/man/nearestClassDistances.Rd bioimagetools/man/plotNearestClassDistances.Rd bioimagetools/man/standardize.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.