Yeast.Biogrid.data: Yeast BioGRID data

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Yeast BioGRID data

Description

Protein-protein interaction (PPI) data (BioGRID) of yeast have been downloaded from the BioGRID database, that collects PPI data from both high-throughput studies and conventional focused studies (Stark et al. 2006). Data are represented through a binary named matrix and represent the presence or absence of protein-protein interactions. Names correspond to systematic names of yeast genes.

Usage

data(Yeast.Biogrid.data)

Format

Binary named matrix. Entry Yeast.Biogrid.data[i,j] = 1 if there is an interaction between gene i and j, otherwise Yeast.Biogrid.data[i,j] = 0.

Source

BioGRID data base: https://thebiogrid.org

References

Stark, C., Breitkreutz, B., Reguly, T., Boucher, L., Breitkreutz, A., and Tyers, M. (2006). BioGRID: a general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.

Examples

data(Yeast.Biogrid.data);
Yeast.Biogrid.data[1:10,1:5];

bionetdata documentation built on Sept. 12, 2022, 9:05 a.m.