bios2mds: From BIOlogical Sequences to MultiDimensional Scaling

Bios2mds is primarily dedicated to the analysis of biological sequences by metric MultiDimensional Scaling with projection of supplementary data. It contains functions for reading multiple sequence alignment files, calculating distance matrices, performing metric multidimensional scaling and visualizing results.

AuthorJulien Pele with Jean-Michel Becu, Herve Abdi, and Marie Chabbert
Date of publication2012-06-05 11:16:15
MaintainerMarie Chabbert <marie.chabbert@univ-angers.fr>
LicenseGPL
Version1.2.2

View on CRAN

Files in this package

bios2mds
bios2mds/MD5
bios2mds/data
bios2mds/data/gpcr.rda
bios2mds/data/datalist
bios2mds/data/sub.mat.rda
bios2mds/man
bios2mds/man/gpcr.Rd bios2mds/man/col.group.Rd bios2mds/man/scree.plot.Rd bios2mds/man/random.msa.Rd bios2mds/man/write.mmds.pdb.Rd bios2mds/man/mat.dis.Rd bios2mds/man/mmds.project.Rd bios2mds/man/mmds.2D.plot.Rd bios2mds/man/import.fasta.Rd bios2mds/man/dis.Rd bios2mds/man/export.fasta.Rd bios2mds/man/mat.dif.Rd bios2mds/man/dif.Rd bios2mds/man/sub.mat.Rd bios2mds/man/mmds.2D.multi.Rd bios2mds/man/extract.cluster.Rd bios2mds/man/bios2mds-package.Rd bios2mds/man/mmds.3D.plot.Rd bios2mds/man/mmds.Rd bios2mds/man/kmeans.run.Rd bios2mds/man/import.msf.Rd bios2mds/man/sil.score.Rd bios2mds/man/mmds.plot.Rd
bios2mds/inst
bios2mds/inst/doc
bios2mds/inst/doc/bios2mds.pdf
bios2mds/inst/csv
bios2mds/inst/csv/human_gpcr_group.csv
bios2mds/inst/csv/drome_gpcr_group.csv
bios2mds/inst/msa
bios2mds/inst/msa/human_gpcr.msf
bios2mds/inst/msa/drome_gpcr.fa
bios2mds/inst/msa/human_gpcr.fa
bios2mds/inst/msa/drome_gpcr.msf
bios2mds/NAMESPACE
bios2mds/R
bios2mds/R/mmds.2D.multi.R bios2mds/R/dis.R bios2mds/R/kmeans.run.R bios2mds/R/mat.dis.R bios2mds/R/mmds.2D.plot.R bios2mds/R/import.fasta.R bios2mds/R/is.gap.R bios2mds/R/extract.cluster.R bios2mds/R/mmds.R bios2mds/R/dif.R bios2mds/R/mmds.3D.plot.R bios2mds/R/col.group.R bios2mds/R/mmds.project.R bios2mds/R/sil.score.R bios2mds/R/random.msa.R bios2mds/R/import.msf.R bios2mds/R/mat.dif.R bios2mds/R/is.aa.R bios2mds/R/write.mmds.pdb.R bios2mds/R/scree.plot.R bios2mds/R/mmds.plot.R bios2mds/R/export.fasta.R
bios2mds/DESCRIPTION
bios2mds/ChangeLog

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