extract.cluster: Extraction of clusters alignments
In bios2mds: From Biological Sequences to Multidimensional Scaling

Description Usage Arguments Details Value Author(s) Examples

Extracts the multiple sequence alignement of each cluster after K-means clustering.

1	extract.cluster(x, align)

`x`	an object of class 'kmean', obtained from `kmeans.run` function.
`align`	an object of class 'align', obtained from `import.fasta` or `import.msf` function.

Extraction of the MSA of each cluster.

A named list of 'align' objects.

Jean-Michel Becu

# Clustering human GPCRs in 4 groups with 100 runs of K-means 
# and extraction of the alignment of each cluster
aln <- import.fasta(system.file("msa/human_gpcr.fa", package = "bios2mds"))
data(gpcr)
kmeans <- kmeans.run(gpcr$mmds$sapiens.active$coord, nb.clus = 4, nb.run = 100)
clusAlign <- extract.cluster(kmeans,aln)