Files in biosurvey

Tools for Biological Survey Planning

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/random_selection.R R/short_helpers.R R/plot_PAM_CS.R R/DI_plot_helpers.R R/color_palettes.R R/selected_sites_SAC.R R/plot_SAC.R R/selection_helpers.R R/master_matrix.R R/Classes.R R/selected_sites_DI.R R/preselected_dist_mask.R R/prepare_PAM_CS.R R/uniformE_selection.R R/selectionEG_helpers.R R/explore_data_EG.R R/make_blocks.R R/data_documentation.R R/Methods.R R/EG_selection.R R/PAM_indices.R R/pam_helpers.R R/plot_blocks_EG.R R/reduce_pam.R R/biosurvey.R R/uniformG_selection.R R/globals.R R/compare_SAC.R R/plot_sites_EG.R R/base_pam.R R/block_sample.R R/plot_PAM_geo.R inst/doc/biosurvey_selecting_sites.R

inst/doc/biosurvey_selection_with_preselected_sites.html

inst/doc/biosurvey_preparing_data.html

inst/doc/biosurvey_selection_with_preselected_sites.Rmd inst/doc/biosurvey_testing_module.R inst/doc/biosurvey_testing_module.Rmd inst/doc/biosurvey_preparing_data.R inst/doc/biosurvey_selection_with_preselected_sites.R

inst/doc/biosurvey_testing_module.html

inst/doc/biosurvey_preparing_data.Rmd

inst/doc/biosurvey_selecting_sites.html

inst/doc/biosurvey_selecting_sites.Rmd

inst/extdata/variables.tif

inst/extdata/sp_layers.tif

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-PAM_indices.R tests/testthat/test-make_blocks.R tests/testthat/test-uniformG_selection.R tests/testthat/test-EG_selection.R tests/testthat/test-helpers_spp_tables.R tests/testthat/test-PAM_from_table.R tests/testthat/test-prepare_master_matrix.R tests/testthat/test-preselected_dist_mask.R tests/testthat/test-plotting_errors.R tests/testthat/test-subset_PAM.R tests/testthat/test-selection_helpers.R tests/testthat/test-selected_sites_DI.R tests/testthat/test-selected_sites_SAC.R tests/testthat/test-grid_from_region.R tests/testthat/test-random_selection.R tests/testthat/test-block_sample.R tests/testthat/test-uniformE_selection.R tests/testthat/test-prepare_base_PAM.R tests/testthat/test-selectionEG_helpers.R tests/testthat/test-prepare_PAM_CS.R tests/testthat/test-short_helpers.R vignettes/biosurvey_selection_with_preselected_sites.Rmd vignettes/biosurvey_testing_module.Rmd vignettes/biosurvey_preparing_data.Rmd vignettes/biosurvey_selecting_sites.Rmd

vignettes/vignette_img/V1f1.png

vignettes/vignette_img/V4_f11.png

vignettes/vignette_img/V2_f1.png

vignettes/vignette_img/V4_f10.png

vignettes/vignette_img/V1f3.png

vignettes/vignette_img/V2_f3.png

vignettes/vignette_img/V4_f12.png

vignettes/vignette_img/V4_f7.png

vignettes/vignette_img/V3_f6.png

vignettes/vignette_img/V4_f3.png

vignettes/vignette_img/V4_f4.png

vignettes/vignette_img/V1f2.png

vignettes/vignette_img/biosurveyfinal.png

vignettes/vignette_img/V4_f1.png

vignettes/vignette_img/V4_f14.png

vignettes/vignette_img/V2_f2.png

vignettes/vignette_img/V3_f3.png

vignettes/vignette_img/V2_f4.png

vignettes/vignette_img/V3_f4.png

vignettes/vignette_img/V4_f13.png

vignettes/vignette_img/V4_f5.png

vignettes/vignette_img/V3_f5.png

vignettes/vignette_img/V3_f1.png

vignettes/vignette_img/V4_f2.png

vignettes/vignette_img/V3_f2.png

vignettes/vignette_img/V4_f9.png

vignettes/vignette_img/V4_f6.png

vignettes/vignette_img/V4_f8.png

data/dist_list.rda

data/sp_data.rda

data/species_data.rda

data/mx.rda

data/m_matrix_pre.rda

data/preselected.rda

data/b_pam.rda

data/sp_occurrences.rda

data/m_matrix.rda

data/m_selection.rda

man/legend_bar.Rd man/selected_sites_SAC.Rd man/closest_to_centroid.Rd man/files_2data.Rd man/plot_SAC.Rd man/point_sample.Rd man/plot_PAM_geo.Rd man/m_matrix.Rd man/grid_from_region.Rd man/plot_DI.Rd man/unimodal_test.Rd man/PAM_subset.Rd man/sp_occurrences.Rd man/prepare_master_matrix.Rd man/point_thinning.Rd man/plot_blocks_EG.Rd man/find_clusters.Rd man/mx.Rd man/make_blocks.Rd man/species_data.Rd man/wgs84_2aed_laea.Rd man/variables.Rd man/uniformE_selection.Rd man/preselected.Rd man/point_sample_cluster.Rd man/uniformG_selection.Rd man/plot_PAM_CS.Rd man/b_pam.Rd man/m_matrix_pre.Rd man/sp_layers.Rd man/selected_sites_PAM.Rd man/compare_SAC.Rd man/refill_PAM_indices.Rd man/prepare_base_PAM.Rd man/distance_filter.Rd man/base_PAM.Rd man/EG_selection.Rd man/random_selection.Rd man/subset_PAM.Rd man/find_modes.Rd man/preselected_dist_mask.Rd man/PAM_from_table.Rd man/prepare_PAM_CS.Rd man/sp_data.Rd man/assign_blocks.Rd man/stack_2data.Rd man/spdf_2data.Rd man/plot_sites_EG.Rd man/dist_list.Rd man/PAM_CS.Rd man/print.Rd man/rlist_2data.Rd man/selected_sites_DI.Rd man/dis_loop.Rd man/DI_dendrogram.Rd man/biosurvey.Rd man/purplow.Rd man/master_selection.Rd man/summary.Rd man/master_matrix.Rd man/block_sample.Rd man/PAM_indices.Rd man/m_selection.Rd man/match_rformat.Rd man/explore_data_EG.Rd

man/figures/simple_wf.png

man/figures/biosurveyfinal.png

biosurvey documentation built on Sept. 16, 2021, 1:07 a.m.