Description Usage Arguments Value Examples
View source: R/DI_plot_helpers.R
Creates matrix-like plots of dissimilarities found among communities of species in distinct sites selected or sets of sites selected for sampling.
1 2 3 4 |
DI_selected_sites |
list of results obtained with function
|
selection_type |
type of selection to be considered when creating DI matrix plot. Options are: "selections", "random", "E", "G", and "EG". The default, "selections", plots a comparison among all selection types. |
selection_number |
(numeric) number of selection to be plotted.
Default = 1. Ignored if |
values |
(logical) whether or not to add values of dissimilarity. Default = TRUE. |
col |
a list of colors derived from a palette. Default =
|
xlab |
(character) label for x axis of plot. Default = "Number of sites". |
ylab |
(character) label for y axis of plot. Default = "Species". |
A plot of a matrix of dissimilarities among sites selected for sampling, or among sets of sampling sites selected. Random is abbreviated as "R" in labels.
1 2 3 4 5 6 7 8 9 10 11 12 | # Data
data("b_pam", package = "biosurvey")
data("m_selection", package = "biosurvey")
# Subsetting base PAM according to selections
sub_pam_all <- subset_PAM(b_pam, m_selection, selection_type = "all")
# Calculating dissimilarities
DI_sel <- selected_sites_DI(sub_pam_all)
# Plotting
plot_DI(DI_sel)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.